| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s115_97V6.2 |
| Family | GT4 |
| Protein Properties | Length: 523 Molecular Weight: 58229.9 Isoelectric Point: 7.1664 |
| Chromosome | Chromosome/Scaffold: 115 Start: 644239 End: 646807 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT4 | 333 | 470 | 3.1e-23 |
| VLGAAGRLVRDKGHPILFEAFSEILKTHKDVYLLVAGSGPWGSRYEELGPNVKTIGPLIPSQLSEFYNAVDIFVNPTLRAQGLDITLLEAMQCGKPLLAT HFSSIVWSVITDKKIGYTFSPNVQSLVVALEKVIKDGK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 523 Download |
| MRENQRWRGL LKDNEGFMLV SRRFVWAVIL GGALLCYVMA LMGSASCRSP LLVWDSGVRL 60 VASSVKPAAT AVDMVDPAMW SGDVRDLSMA WNRLCYGSKP PVTIRIAVFV KKWPIGGTPG 120 GLERHAMTLH RALADRGHVV HVFTMRQPGA GTSGEEVEAE EERQHSNTHI HFMKPNEAGG 180 FDFVPAWEKF SEINATHPFD IVHSESVALP HWKALPIEKL AASWHGIQFE TIHSDIVEDL 240 IRKPDENRTE GLMQTMSSRL VRVADEVRFF PSYRHHVATS DYVGDVLRTI YEIPLENVHI 300 ILNGVNEQDF RPNPSAGAAF RAKYGVPSNA SLVLGAAGRL VRDKGHPILF EAFSEILKTH 360 KDVYLLVAGS GPWGSRYEEL GPNVKTIGPL IPSQLSEFYN AVDIFVNPTL RAQGLDITLL 420 EAMQCGKPLL ATHFSSIVWS VITDKKIGYT FSPNVQSLVV ALEKVIKDGK DKLREKGQTC 480 LAYASKMFTA KKMASAYERL FLCITNEEYC QYPSPIDEQE CH* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03807 | GT1_WbnK_like | 4.0e-29 | 119 | 501 | 395 | + This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. | ||
| COG0438 | RfaG | 5.0e-33 | 104 | 508 | 413 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| TIGR00032 | argG | 3.0e-34 | 126 | 500 | 389 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
| cd03798 | GT1_wlbH_like | 4.0e-42 | 120 | 500 | 398 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03801 | GT1_YqgM_like | 4.0e-60 | 105 | 501 | 405 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001769489.1 | 0 | 74 | 522 | 1 | 449 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001778030.1 | 0 | 82 | 521 | 15 | 448 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002271108.1 | 0 | 80 | 513 | 53 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002317369.1 | 0 | 80 | 517 | 56 | 483 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519899.1 | 0 | 60 | 513 | 36 | 486 | glycosyltransferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3oka_B | 0.000000001 | 303 | 431 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3oka_A | 0.000000001 | 303 | 431 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3okp_A | 0.000000001 | 303 | 431 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3okc_A | 0.000000001 | 303 | 431 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form) |
| PDB | 2f9f_A | 0.0002 | 355 | 468 | 43 | 162 | A Chain A, Crystal Structure Of The Putative Mannosyl Transferase (Wbaz-1)from Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr29a |
