Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s117_149V6.1 |
Family | PL4 |
Protein Properties | Length: 694 Molecular Weight: 78178.6 Isoelectric Point: 5.7329 |
Chromosome | Chromosome/Scaffold: 117 Start: 945764 End: 950600 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 55 | 667 | 0 |
ASISLVEQDKYVILDNGIVEMTLTKPGGIVTCVKYGGIENLLETHNKETNRGYWDLNWSPVGGRDTFDVISGTSFSVVYKDDNRVEVSFYRPYDPNCGGI PVNIDKRFVLLRGVSGFYTYGIYDRPCGWPAFNFNQNRVTFKLQKDKFHFMAVADDRQRVMPCPEDLTPTRCEQLAYPEAHVLTDPVDPDLCGEVDDKYQ YTMDNKDMKVHGWASDDPRVGWWIISPSNEFRNGGPTKQNLTSHVGPTCLAVFQGAHYAGSDLNPGFEEGEPWEKVFGPVFIYLNSAPPGTPHSALWENA KAQAAEEESAWPYSWAGSPAFLKAEERGTLSGRLLVSDPFQPPYTWGAKDAYLGLAAPGEAGSWQTESKGYQFWTQADADGCFCIRNIRPGVYDLYGWVP GVPGDFKYAQGSIHIQPGAVVDVSDITYSSPRDGPTVWEIGFPDRTAKGFFVPDANPKYANKLFLNHPEKWRQYGLWERYTDLYPTEDLVYTVGQSDWRK DWFFAHLTRMNPDGTYSPTTWEIRFELPDVVTGIPYKLRIASAAANVGAIQVFVNNMDRTKKPLFDTMQYGKDNAVARHGIHGLYKLWNIDVDSNLLQAG PNVIYLTQRKATG |
Full Sequence |
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Protein Sequence Length: 694 Download |
MFRGIRKFVH ELKEDILHDH DHPHACEQPH IAQQPHIPHH PHTSYSPHAS GFIGASISLV 60 EQDKYVILDN GIVEMTLTKP GGIVTCVKYG GIENLLETHN KETNRGYWDL NWSPVGGRDT 120 FDVISGTSFS VVYKDDNRVE VSFYRPYDPN CGGIPVNIDK RFVLLRGVSG FYTYGIYDRP 180 CGWPAFNFNQ NRVTFKLQKD KFHFMAVADD RQRVMPCPED LTPTRCEQLA YPEAHVLTDP 240 VDPDLCGEVD DKYQYTMDNK DMKVHGWASD DPRVGWWIIS PSNEFRNGGP TKQNLTSHVG 300 PTCLAVFQGA HYAGSDLNPG FEEGEPWEKV FGPVFIYLNS APPGTPHSAL WENAKAQAAE 360 EESAWPYSWA GSPAFLKAEE RGTLSGRLLV SDPFQPPYTW GAKDAYLGLA APGEAGSWQT 420 ESKGYQFWTQ ADADGCFCIR NIRPGVYDLY GWVPGVPGDF KYAQGSIHIQ PGAVVDVSDI 480 TYSSPRDGPT VWEIGFPDRT AKGFFVPDAN PKYANKLFLN HPEKWRQYGL WERYTDLYPT 540 EDLVYTVGQS DWRKDWFFAH LTRMNPDGTY SPTTWEIRFE LPDVVTGIPY KLRIASAAAN 600 VGAIQVFVNN MDRTKKPLFD TMQYGKDNAV ARHGIHGLYK LWNIDVDSNL LQAGPNVIYL 660 TQRKATGPFN AIMYDYLRLE APVRGCHSDV DSD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-31 | 380 | 480 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 7.0e-53 | 492 | 680 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 8.0e-71 | 57 | 349 | 299 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-79 | 44 | 249 | 207 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD10227.1 | 0 | 55 | 682 | 14 | 642 | putative MYST1 [Oryza sativa Japonica Group] |
RefSeq | NP_001062464.1 | 0 | 55 | 682 | 27 | 655 | Os08g0554100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_001763359.1 | 0 | 66 | 692 | 1 | 630 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769727.1 | 0 | 66 | 693 | 4 | 631 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002527352.1 | 0 | 56 | 682 | 5 | 631 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njv_A | 0.002 | 426 | 660 | 283 | 483 | A Chain A, Crystal Structure Of A Methyltransferase-Like Protein (Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A Resolution |
PDB | 2xhn_B | 0.002 | 426 | 660 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.002 | 426 | 660 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 3njx_A | 0.002 | 426 | 660 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 1nkg_A | 0.002 | 426 | 660 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC327604 | 260 | 200 | 459 | 0 |
FC337098 | 262 | 353 | 614 | 0 |
FE510614 | 275 | 394 | 668 | 0 |
GW864372 | 312 | 193 | 504 | 0 |
DW479599 | 289 | 57 | 340 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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