Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s118_31V6.1 |
Family | CE8 |
Protein Properties | Length: 393 Molecular Weight: 43430.2 Isoelectric Point: 7.8341 |
Chromosome | Chromosome/Scaffold: 118 Start: 244928 End: 247170 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 97 | 385 | 0 |
RKRGVGHFTTVQAAIDHVPVNNDRRVHIIVAPGVYKEKIVVPSSKPYVTILGGGWNNTILQWNDTADCADKEGAKLGTYWSASLAVEAQYFIARNITIKN TASMPAAGAAGKQAVALRVTGDTAAFYGCRFMSTQDTLYDHVGRHYFKDCYIEGSIDFVFGNGRSLYESCHLHALPRTTFGSVAAQKRGNVSEQTGFSFL NCKITGSGLLYLGRAWGSYARVVYSYTYMDNIIVPAGWSNWNDPRRNKTVIFGQYKCFGPGAKQTGRVPWSHELTDTEARPFLSLSFVD |
Full Sequence |
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Protein Sequence Length: 393 Download |
MTKLFLSGLH EERDTPRVHG WCDIRGWINI IVVATLMFLS MVTPGSTVSG SEQVSDFSVA 60 PDEELVQLVQ RMGTVDHSVF EIAENRITPL AVIYVNRKRG VGHFTTVQAA IDHVPVNNDR 120 RVHIIVAPGV YKEKIVVPSS KPYVTILGGG WNNTILQWND TADCADKEGA KLGTYWSASL 180 AVEAQYFIAR NITIKNTASM PAAGAAGKQA VALRVTGDTA AFYGCRFMST QDTLYDHVGR 240 HYFKDCYIEG SIDFVFGNGR SLYESCHLHA LPRTTFGSVA AQKRGNVSEQ TGFSFLNCKI 300 TGSGLLYLGR AWGSYARVVY SYTYMDNIIV PAGWSNWNDP RRNKTVIFGQ YKCFGPGAKQ 360 TGRVPWSHEL TDTEARPFLS LSFVDGDEWV QP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 4.0e-110 | 92 | 391 | 302 | + pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-111 | 99 | 392 | 295 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-115 | 100 | 391 | 292 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-122 | 67 | 392 | 327 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 33 | 392 | 363 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 30 | 391 | 7 | 378 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 55 | 391 | 47 | 382 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_001769817.1 | 0 | 41 | 392 | 1 | 352 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002330522.1 | 0 | 62 | 391 | 52 | 380 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 62 | 391 | 54 | 382 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 100 | 391 | 15 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 98 | 391 | 9 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-23 | 103 | 369 | 43 | 347 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 1e-22 | 104 | 378 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 1e-22 | 104 | 378 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DC957624 | 245 | 149 | 393 | 0 |
DC937343 | 248 | 5 | 252 | 0 |
BJ969707 | 197 | 1 | 197 | 0 |
DC933591 | 194 | 1 | 194 | 0 |
BJ976120 | 181 | 213 | 393 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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