Basic Information | |
---|---|
Species | Physcomitrella patens |
Cazyme ID | Pp1s118_55V6.1 |
Family | CE8 |
Protein Properties | Length: 431 Molecular Weight: 46015.7 Isoelectric Point: 4.331 |
Chromosome | Chromosome/Scaffold: 118 Start: 332504 End: 334999 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 132 | 422 | 0 |
YTSVQAAIDAVPENNTGLVTIEILSGTYTEKVSIPSNKPYITLQGTGRTTTIITYNDTANSTNSTFRSATFSVWANNFTARNLTFQNSAPHAVAGETGAQ AVALLIGGDMAAFYGCGFLSSQDTICDDAGRHYFRDCYVEGNIDIIWGNGQSLYEYCEVKSTADNSSGCITAQGRASDDETTGFIFVGGSITGTGYNLLG RAYGLYSRVLFIDTYMDNIINPQGWSDWPTTVTMYNSSSRRLLDNSTIRHEYYGEYGNTGPGASLTYRVNWMHNLTEAEAANFSSLTFIDG |
Full Sequence |
---|
Protein Sequence Length: 431 Download |
MAENLVISVS RSIVTLSALV IFGNLLEQSH GQWWFPTAPT TTSPSSNSTN PTNSSTNIPP 60 SASFTTPPVM SPSFSFPINP AGSNTSSTAT PSTSIGFPTS PYASSSPPTT PTTSTTLIVM 120 SNSFGFGPLT IYTSVQAAID AVPENNTGLV TIEILSGTYT EKVSIPSNKP YITLQGTGRT 180 TTIITYNDTA NSTNSTFRSA TFSVWANNFT ARNLTFQNSA PHAVAGETGA QAVALLIGGD 240 MAAFYGCGFL SSQDTICDDA GRHYFRDCYV EGNIDIIWGN GQSLYEYCEV KSTADNSSGC 300 ITAQGRASDD ETTGFIFVGG SITGTGYNLL GRAYGLYSRV LFIDTYMDNI INPQGWSDWP 360 TTVTMYNSSS RRLLDNSTIR HEYYGEYGNT GPGASLTYRV NWMHNLTEAE AANFSSLTFI 420 DGLSWLASET * |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 1.0e-90 | 132 | 426 | 296 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 4.0e-93 | 132 | 427 | 302 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-95 | 132 | 426 | 295 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 9.0e-98 | 132 | 428 | 304 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-109 | 132 | 426 | 301 | + pectinesterase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001752210.1 | 0 | 132 | 426 | 100 | 383 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001758980.1 | 0 | 161 | 430 | 1 | 258 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769218.1 | 0 | 161 | 426 | 2 | 252 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769817.1 | 0 | 113 | 426 | 48 | 350 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769825.1 | 0 | 157 | 430 | 1 | 259 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 132 | 430 | 19 | 312 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 8.99998e-41 | 132 | 428 | 15 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-16 | 132 | 356 | 44 | 303 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.0000000000002 | 132 | 415 | 18 | 329 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.0000000000002 | 132 | 415 | 18 | 329 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DC936615 | 250 | 139 | 388 | 0 |
DC957844 | 217 | 215 | 431 | 0 |
DC957795 | 210 | 222 | 431 | 0 |
DC958033 | 267 | 153 | 419 | 0 |
DC955236 | 227 | 205 | 431 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|