PlantCAZyme

Basic Information
Species	Physcomitrella patens
Cazyme ID	Pp1s121_168V6.2
Family	GH14
Protein Properties	Length: 409 Molecular Weight: 46380.4 Isoelectric Point: 5.204
Chromosome	Chromosome/Scaffold: 121 Start: 1194169 End: 1198565
Description	beta-amylase 2
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH14	120	403	0
YVMLPLGTIGHDNKVTNPDDLRQKFNALKTAEVDGVMVDCWWGLVEGKEPQHYDWSGYRQLFTMVRDCGLKLQVVMSFHQCGGNVGDDVYIPIPQWVLDI GKDNPDIFFTDKSGVVNPECLTWGVDKVRVLRGRTALEVYYDYMRSFRQEMDEFFMDKTITEIEIGLGACGELRYPSYPETRGWKYPGIGEFQCYDKYLL EDLRKAAEARGHSHWTKPPSNAGEYNSRPQDTEFFRDGGDYDSYYGRFFLKWYSDVLIQHGDRVLTFANIAFEGVKIAAKVGSI

Full Sequence
Protein Sequence Length: 409 Download
MSGLQLLTVG LVPAKSSEFV GCTKFSQCSN LRLPESRSVQ WGVFSHSWTH FSPAAISTSG 60 QLREGSKRGR GVWCRAVEVE KLPEVDGTST LKDLEIEEVT EDLQPTVERD FTGTPNIPIY 120 VMLPLGTIGH DNKVTNPDDL RQKFNALKTA EVDGVMVDCW WGLVEGKEPQ HYDWSGYRQL 180 FTMVRDCGLK LQVVMSFHQC GGNVGDDVYI PIPQWVLDIG KDNPDIFFTD KSGVVNPECL 240 TWGVDKVRVL RGRTALEVYY DYMRSFRQEM DEFFMDKTIT EIEIGLGACG ELRYPSYPET 300 RGWKYPGIGE FQCYDKYLLE DLRKAAEARG HSHWTKPPSN AGEYNSRPQD TEFFRDGGDY 360 DSYYGRFFLK WYSDVLIQHG DRVLTFANIA FEGVKIAAKV GSILKYLH* 420

Full Sequence

Protein Sequence Length: 409 Download

MSGLQLLTVG LVPAKSSEFV GCTKFSQCSN LRLPESRSVQ WGVFSHSWTH FSPAAISTSG    60
QLREGSKRGR GVWCRAVEVE KLPEVDGTST LKDLEIEEVT EDLQPTVERD FTGTPNIPIY    120
VMLPLGTIGH DNKVTNPDDL RQKFNALKTA EVDGVMVDCW WGLVEGKEPQ HYDWSGYRQL    180
FTMVRDCGLK LQVVMSFHQC GGNVGDDVYI PIPQWVLDIG KDNPDIFFTD KSGVVNPECL    240
TWGVDKVRVL RGRTALEVYY DYMRSFRQEM DEFFMDKTIT EIEIGLGACG ELRYPSYPET    300
RGWKYPGIGE FQCYDKYLLE DLRKAAEARG HSHWTKPPSN AGEYNSRPQD TEFFRDGGDY    360
DSYYGRFFLK WYSDVLIQHG DRVLTFANIA FEGVKIAAKV GSILKYLH*                420

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN00197	PLN00197	9.0e-108	72	403	337	+ beta-amylase; Provisional
PLN02803	PLN02803	4.0e-121	117	403	291	+ beta-amylase
PLN02801	PLN02801	2.0e-142	117	403	289	+ beta-amylase
PLN02705	PLN02705	1.0e-147	80	403	325	+ beta-amylase
PLN02905	PLN02905	2.0e-166	91	403	313	+ beta-amylase

Gene Ontology
GO Term	Description
GO:0000272	polysaccharide catabolic process
GO:0016161	beta-amylase activity

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
EMBL	CBI40370.1	0	90	403	87	397	unnamed protein product [Vitis vinifera]
RefSeq	NP_191958.3	0	99	403	77	381	BAM2 (BETA-AMYLASE 2); beta-amylase [Arabidopsis thaliana]
RefSeq	XP_001755209.1	0	107	403	10	306	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001770103.1	0	1	403	1	403	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_002511858.1	0	89	403	76	390	Beta-amylase, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1q6g_A	0	117	403	12	299	A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum
PDB	1v3i_A	0	117	403	12	299	A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase
PDB	1wdq_A	0	117	403	12	299	A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase
PDB	1wdr_A	0	117	403	12	299	A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase
PDB	1wdp_A	0	117	403	12	299	A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase

Metabolic Pathways
Pathway Name	Reaction	EC	Protein Name
starch degradation I	RXN-1827	EC-3.2.1.2	β-amylase

EST Download unfiltered results here

Hit	Length	Start	End	EValue
FC335783	220	1	220	0
BY972450	219	108	326	0
GO367915	271	133	403	0
FC445146	199	205	403	0
JG638376	267	125	391	0

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_025_00081.1	Aquca_053_00137.1	Aquca_005_00422.2	Aquca_005_00422.1	Aquca_013_00058.1
	Aquca_005_00321.1	Aquca_013_00313.3	Aquca_013_00313.1	Aquca_013_00313.2	Aquca_005_00321.2
	Aquca_005_00321.3	Aquca_003_00854.1	Aquca_005_00321.5	Aquca_005_00321.4
Arabidopsis lyrata	479940	915010	493370	482158	490517
	495656	346398	356484	909881	317500.202.436
	317500.202.436	317500.98.200	317500.98.200
Arabidopsis thaliana	AT3G23920.1	AT4G17090.1	AT4G15210.1	AT4G15210.2	AT2G32290.1
	AT4G00490.1	AT5G55700.1	AT2G45880.1	AT5G45300.2	AT5G45300.1
	AT5G55700.2	AT5G18670.1
Brachypodium distachyon	Bradi1g75610.1	Bradi3g28210.1	Bradi3g33730.1	Bradi2g08187.1	Bradi1g25447.1
	Bradi1g25440.1	Bradi1g25440.2	Bradi4g38630.1	Bradi1g18390.1	Bradi3g02800.1
	Bradi1g62400.1	Bradi2g00824.1.102.296	Bradi2g00824.1.102.296	Bradi2g00824.1.300.482	Bradi2g00824.1.300.482
Brassica rapa	Bra015025	Bra001937	Bra012676	Bra026230	Bra038088
	Bra005581	Bra037344	Bra035586	Bra028964	Bra004944
	Bra021962	Bra002178	Bra030861.155.384	Bra030861.155.384	Bra006472.313.564
	Bra006472.313.564	Bra006472.86.240	Bra006472.86.240	Bra030861.18.149	Bra030861.18.149
Carica papaya	evm.model.supercontig_59.40	evm.model.supercontig_18.253	evm.model.supercontig_18.252	evm.model.supercontig_16.112	evm.model.supercontig_12.148
	evm.model.supercontig_24.44
Capsella rubella	Carubv10013332m	Carubv10006488m	Carubv10022978m	Carubv10022897m	Carubv10005077m
	Carubv10000631m	Carubv10026217m	Carubv10000902m	Carubv10022771m	Carubv10025996m
	Carubv10000685m
Chlamydomonas reinhardtii	Cre06.g307150.t1.3	Cre01.g044100.t1.2.93.373	Cre01.g044100.t1.2.93.373	g6066.t1.88.353	g6066.t1.88.353
	g6066.t1.400.544	g6066.t1.400.544
Citrus clementina	Ciclev10004620m	Ciclev10019566m	Ciclev10014929m	Ciclev10019360m	Ciclev10019525m
	Ciclev10019424m	Ciclev10019617m	Ciclev10000501m	Ciclev10000490m	Ciclev10004689m
	Ciclev10020448m	Ciclev10020465m	Ciclev10000805m
Citrus sinensis	orange1.1g008030m	orange1.1g047891m	orange1.1g017328m	orange1.1g010067m	orange1.1g009162m
	orange1.1g008542m	orange1.1g009981m	orange1.1g037037m	orange1.1g005811m	orange1.1g005715m
	orange1.1g009121m	orange1.1g015723m	orange1.1g015815m	orange1.1g015809m	orange1.1g009335m
	orange1.1g010415m.114.332	orange1.1g010415m.114.332	orange1.1g008086m.281.538	orange1.1g008086m.281.538	orange1.1g012883m
	orange1.1g008086m.95.249	orange1.1g008086m.95.249	orange1.1g010415m.337.480	orange1.1g010415m.337.480
Cucumis sativus	Cucsa.255940.1	Cucsa.383110.1	Cucsa.321460.1	Cucsa.149940.1	Cucsa.148270.1
	Cucsa.042020.1	Cucsa.135490.2	Cucsa.135490.1	Cucsa.363240.1	Cucsa.228750.2
	Cucsa.228750.1
Eucalyptus grandis	Eucgr.E00330.1	Eucgr.H02879.1	Eucgr.E01023.1	Eucgr.A01734.1	Eucgr.E00138.1
	Eucgr.E00139.2	Eucgr.E00139.1	Eucgr.H03767.2	Eucgr.H03767.1	Eucgr.D02573.1
Fragaria vesca	mrna28316.1-v1.0-hybrid	mrna10649.1-v1.0-hybrid	mrna23897.1-v1.0-hybrid	mrna25108.1-v1.0-hybrid	mrna19322.1-v1.0-hybrid
	mrna19324.1-v1.0-hybrid	mrna15254.1-v1.0-hybrid	mrna06720.1-v1.0-hybrid	mrna25092.1-v1.0-hybrid	mrna27696.1-v1.0-hybrid
	mrna20803.1-v1.0-hybrid
Glycine max	Glyma09g29840.1	Glyma16g34360.2	Glyma11g04210.1	Glyma01g41190.1	Glyma05g05750.2
	Glyma17g16020.1	Glyma12g11130.1	Glyma06g45700.1	Glyma08g02920.3	Glyma05g36640.1
	Glyma12g32330.2	Glyma13g38110.1	Glyma12g32330.1	Glyma13g38120.1	Glyma18g46630.1
	Glyma09g39603.1	Glyma13g28630.1	Glyma15g10480.1	Glyma09g35070.1	Glyma01g35500.2
	Glyma07g14030.1
Gossypium raimondii	Gorai.011G181000.1	Gorai.011G180900.1	Gorai.006G073600.1	Gorai.008G230100.1	Gorai.007G030600.1
	Gorai.008G230100.2	Gorai.008G230100.3	Gorai.011G181000.3	Gorai.007G349200.2	Gorai.007G349200.1
	Gorai.005G208900.2	Gorai.005G208900.1	Gorai.007G099200.1	Gorai.006G215100.1	Gorai.011G181000.2
	Gorai.004G033500.2	Gorai.004G033500.1	Gorai.007G099100.2	Gorai.007G099100.1	Gorai.007G099100.5
	Gorai.004G033500.3	Gorai.004G158600.3	Gorai.004G158600.2	Gorai.004G158600.1	Gorai.007G099100.4
	Gorai.004G158600.10	Gorai.004G158600.8	Gorai.004G158600.7	Gorai.004G158600.11	Gorai.004G158600.12
	Gorai.004G158600.13	Gorai.008G218300.2	Gorai.008G218300.1	Gorai.011G185700.1	Gorai.008G218300.4
	Gorai.005G057300.3	Gorai.005G057300.2	Gorai.008G218300.3	Gorai.007G099100.6	Gorai.007G099100.3
	Gorai.005G057300.1	Gorai.004G158600.5	Gorai.004G158600.4	Gorai.004G158600.14	Gorai.004G158600.9
	Gorai.004G158600.6	Gorai.011G185700.2	Gorai.007G099100.8	Gorai.007G099100.7
Linum usitatissimum	Lus10004396	Lus10011035	Lus10001087	Lus10023700	Lus10040134
	Lus10039701	Lus10018491	Lus10003005.166.465	Lus10003005.166.465	Lus10039702
	Lus10023698	Lus10016615	Lus10030392	Lus10033976	Lus10012804
	Lus10035679	Lus10022516	Lus10018842	Lus10004398.264.475	Lus10004398.264.475
	Lus10037846.133.367	Lus10037846.133.367	Lus10004398.97.256	Lus10004398.97.256	Lus10017820
	Lus10023699	Lus10037846.367.526	Lus10037846.367.526	Lus10003005.77.166	Lus10003005.77.166
Malus domestica	MDP0000193684	MDP0000142134	MDP0000144491	MDP0000397284	MDP0000232760
	MDP0000223799	MDP0000193840	MDP0000186321	MDP0000276235	MDP0000902717
	MDP0000152511	MDP0000149950	MDP0000262498	MDP0000320172	MDP0000199386
	MDP0000196961	MDP0000764433	MDP0000730308.253.475	MDP0000730308.253.475	MDP0000206646
	MDP0000270321	MDP0000730308.93.252	MDP0000730308.93.252	MDP0000151553	MDP0000951028
	MDP0000221724	MDP0000141800	MDP0000252490	MDP0000143571	MDP0000569713
	MDP0000742467.364.473	MDP0000742467.364.473	MDP0000742467.245.370	MDP0000742467.245.370	MDP0000156852
Manihot esculenta	cassava4.1_004345m	cassava4.1_004325m	cassava4.1_007768m	cassava4.1_005562m	cassava4.1_022883m
	cassava4.1_005532m	cassava4.1_034006m	cassava4.1_002728m	cassava4.1_034364m	cassava4.1_005239m
	cassava4.1_032401m	cassava4.1_027464m
Medicago truncatula	Medtr5g013640.1	Medtr5g013620.1	Medtr2g089030.1	Medtr2g020240.1	Medtr5g026210.1
	Medtr5g026210.2
Mimulus guttatus	mgv1a003946m	mgv1a020099m	mgv1a005201m	mgv1a006126m	mgv1a003882m
	mgv1a004577m	mgv1a010885m	mgv1a002519m	mgv1a002385m	mgv1a019039m
	mgv1a021359m	mgv1a025115m	mgv1a025317m.115.312	mgv1a025317m.115.312	mgv1a013237m
	mgv1a025317m.13.111	mgv1a025317m.13.111	mgv1a010101m.75.163	mgv1a010101m.75.163	mgv1a010101m.174.294
	mgv1a010101m.174.294
Oryza sativa	LOC_Os03g04770.1	LOC_Os10g32810.1	LOC_Os10g41550.1	LOC_Os07g35940.1	LOC_Os07g35880.1
	LOC_Os01g13550.1	LOC_Os09g39570.1	LOC_Os02g03690.1	LOC_Os07g47120.1	LOC_Os03g22790.1
Panicum virgatum	Pavirv00029549m	Pavirv00052483m	Pavirv00001388m	Pavirv00055805m	Pavirv00005817m
	Pavirv00059428m	Pavirv00038949m	Pavirv00029779m	Pavirv00029778m	Pavirv00030206m
	Pavirv00001675m	Pavirv00041462m	Pavirv00049134m	Pavirv00011808m	Pavirv00015859m
	Pavirv00053609m	Pavirv00044941m.182.444	Pavirv00044941m.182.444	Pavirv00066842m	Pavirv00005512m
	Pavirv00056071m.82.381	Pavirv00056071m.82.381	Pavirv00070697m	Pavirv00044941m.443.562	Pavirv00044941m.443.562
	Pavirv00056071m.378.515	Pavirv00056071m.378.515
Physcomitrella patens	Pp1s106_57V6.1	Pp1s317_42V6.1	Pp1s233_4V6.1	Pp1s23_21V6.1	Pp1s16_320V6.1
	Pp1s121_168V6.1	Pp1s9_318V6.6	Pp1s9_318V6.5	Pp1s9_318V6.4	Pp1s9_318V6.3
	Pp1s9_318V6.2	Pp1s9_318V6.1
Phaseolus vulgaris	Phvul.004G143600.1	Phvul.003G226900.1	Phvul.011G107700.1	Phvul.005G112400.1	Phvul.002G301200.1
	Phvul.008G065600.1	Phvul.006G161200.1	Phvul.002G123700.1
Picea abies	MA_124514g0010	MA_129283g0010	MA_3193g0010	MA_10432035g0010	MA_10432630g0020
	MA_21789g0010	MA_35466g0010.91.318	MA_35466g0010.91.318	MA_8617832g0010	MA_10436858g0010
	MA_9400165g0010	MA_10432251g0010	MA_119385g0010	MA_158054g0010	MA_140148g0010
	MA_9635863g0010	MA_5725043g0010	MA_126087g0010	MA_35466g0010.318.430	MA_35466g0010.318.430
	MA_119385g0020	MA_436199g0010	MA_19374g0030	MA_7200737g0010	MA_10429945g0010
	MA_19374g0020	MA_9635863g0020
Populus trichocarpa	Potri.010G062900.1	Potri.001G148900.3	Potri.001G148900.2	Potri.001G148900.1	Potri.008G174100.2
	Potri.008G174100.1	Potri.003G085500.1	Potri.010G062900.2	Potri.003G143500.1	Potri.017G040800.3
	Potri.017G040800.1	Potri.001G087600.1	Potri.017G040800.2	Potri.014G083800.1	Potri.014G083800.3
	Potri.017G040800.4	Potri.014G083700.1	Potri.002G159300.5	Potri.002G159300.3	Potri.002G159300.1
	Potri.002G159300.4	Potri.017G040800.5	Potri.003G106500.3	Potri.003G106500.5	Potri.003G106500.2
	Potri.003G106500.1	Potri.008G204200.1	Potri.002G159300.6	Potri.003G106500.4	Potri.014G083800.2
	Potri.002G159300.2	Potri.017G040800.6	Potri.014G083700.2	Potri.008G204200.2	Potri.T101200.1
	Potri.T101100.1
Prunus persica	ppa005431m	ppa003812m	ppa003539m	ppa004334m	ppa006189m
	ppa005450m	ppa002199m	ppa002957m	ppa004116m	ppa019231m
Ricinus communis	29904.m003046	29822.m003517	30156.m001723	30174.m009028	30174.m009027
	29726.m003986	29827.m002636	29629.m001377
Setaria italica	Si034946m	Si035044m	Si034983m	Si033152m	Si029378m
	Si000924m	Si028957m	Si016592m	Si032033m	Si034947m
	Si016622m.223.485	Si016622m.223.485	Si016622m.485.614	Si016622m.485.614
Selaginella moellendorffii	145994	232533	419538
Sorghum bicolor	Sb01g047500.1	Sb01g028700.1	Sb01g019850.1	Sb02g035600.1	Sb02g035590.1
	Sb03g000480.1	Sb02g012320.1	Sb04g002450.1	Sb02g042220.1	Sb01g035370.1
	Sb02g035600.2.13.225	Sb02g035600.2.13.225	Sb02g035600.3.209.308	Sb02g035600.3.209.308	Sb02g035600.2.224.323
	Sb02g035600.2.224.323
Thellungiella halophila	Thhalv10002460m	Thhalv10024842m	Thhalv10024989m	Thhalv10016419m	Thhalv10028560m
	Thhalv10013225m	Thhalv10001342m	Thhalv10001222m	Thhalv10013215m
Vitis vinifera	GSVIVT01013272001	GSVIVT01030642001	GSVIVT01001863001	GSVIVT01026922001	GSVIVT01014681001
	GSVIVT01026920001	GSVIVT01036911001	GSVIVT01019605001	GSVIVT01017808001
Volvox carteri	Vocar20007787m	Vocar20012728m

CAZyme Information