Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s121_168V6.2 |
Family | GH14 |
Protein Properties | Length: 409 Molecular Weight: 46380.4 Isoelectric Point: 5.204 |
Chromosome | Chromosome/Scaffold: 121 Start: 1194169 End: 1198565 |
Description | beta-amylase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 120 | 403 | 0 |
YVMLPLGTIGHDNKVTNPDDLRQKFNALKTAEVDGVMVDCWWGLVEGKEPQHYDWSGYRQLFTMVRDCGLKLQVVMSFHQCGGNVGDDVYIPIPQWVLDI GKDNPDIFFTDKSGVVNPECLTWGVDKVRVLRGRTALEVYYDYMRSFRQEMDEFFMDKTITEIEIGLGACGELRYPSYPETRGWKYPGIGEFQCYDKYLL EDLRKAAEARGHSHWTKPPSNAGEYNSRPQDTEFFRDGGDYDSYYGRFFLKWYSDVLIQHGDRVLTFANIAFEGVKIAAKVGSI |
Full Sequence |
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Protein Sequence Length: 409 Download |
MSGLQLLTVG LVPAKSSEFV GCTKFSQCSN LRLPESRSVQ WGVFSHSWTH FSPAAISTSG 60 QLREGSKRGR GVWCRAVEVE KLPEVDGTST LKDLEIEEVT EDLQPTVERD FTGTPNIPIY 120 VMLPLGTIGH DNKVTNPDDL RQKFNALKTA EVDGVMVDCW WGLVEGKEPQ HYDWSGYRQL 180 FTMVRDCGLK LQVVMSFHQC GGNVGDDVYI PIPQWVLDIG KDNPDIFFTD KSGVVNPECL 240 TWGVDKVRVL RGRTALEVYY DYMRSFRQEM DEFFMDKTIT EIEIGLGACG ELRYPSYPET 300 RGWKYPGIGE FQCYDKYLLE DLRKAAEARG HSHWTKPPSN AGEYNSRPQD TEFFRDGGDY 360 DSYYGRFFLK WYSDVLIQHG DRVLTFANIA FEGVKIAAKV GSILKYLH* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN00197 | PLN00197 | 9.0e-108 | 72 | 403 | 337 | + beta-amylase; Provisional |
PLN02803 | PLN02803 | 4.0e-121 | 117 | 403 | 291 | + beta-amylase |
PLN02801 | PLN02801 | 2.0e-142 | 117 | 403 | 289 | + beta-amylase |
PLN02705 | PLN02705 | 1.0e-147 | 80 | 403 | 325 | + beta-amylase |
PLN02905 | PLN02905 | 2.0e-166 | 91 | 403 | 313 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40370.1 | 0 | 90 | 403 | 87 | 397 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_191958.3 | 0 | 99 | 403 | 77 | 381 | BAM2 (BETA-AMYLASE 2); beta-amylase [Arabidopsis thaliana] |
RefSeq | XP_001755209.1 | 0 | 107 | 403 | 10 | 306 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001770103.1 | 0 | 1 | 403 | 1 | 403 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002511858.1 | 0 | 89 | 403 | 76 | 390 | Beta-amylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1q6g_A | 0 | 117 | 403 | 12 | 299 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1v3i_A | 0 | 117 | 403 | 12 | 299 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 1wdq_A | 0 | 117 | 403 | 12 | 299 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1wdr_A | 0 | 117 | 403 | 12 | 299 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1wdp_A | 0 | 117 | 403 | 12 | 299 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC335783 | 220 | 1 | 220 | 0 |
BY972450 | 219 | 108 | 326 | 0 |
GO367915 | 271 | 133 | 403 | 0 |
FC445146 | 199 | 205 | 403 | 0 |
JG638376 | 267 | 125 | 391 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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