Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s12_341V6.1 |
Family | GT5 |
Protein Properties | Length: 722 Molecular Weight: 78806.3 Isoelectric Point: 6.8463 |
Chromosome | Chromosome/Scaffold: 12 Start: 2406486 End: 2411740 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 231 | 714 | 0 |
NVIVVAAECAPWSKTGGLGDVVGALPKALARRGHRVMVVAPRYSNYNDAWETGIRRIYNVSGQDMEVGYFHCFLDGVDYVFIDNPIFHAYANNIYGGSRE DVLNRMILLSKAAVETPWHVPCGGVCYGDGNLVFIANDWHTALVPVYLQAHYRDNGYMKFARSVLVIHNMAHQGRGPLKDYGKLGLPDHYISKFRLYDPQ GGEHNNIFMAGLITAHRIVTVSHGYAWEVQTPEGGWGLDGVIRDHNWKLRGVVNGIDDKEWNPDLDVHLKSDGYTNYDIETLDSGKAACKAALQKELGFP VRPEVPLLGFIGRLDSQKGIDIIAQAMPWLVTQDIQLVMLGTGRKDYEDMLRHFEGAYRDKVRGWVGFSVQTAHRITAGVDILLMPSRFEPCGLNQLYAM RYGTVPVVHAVGGLKDTVQQFNPFNESGLGWTFDGLNADAFIHALGNAMWTYLDFKTSWKGIQQRGMSQNLSWDHAAQQYEEVL |
Full Sequence |
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Protein Sequence Length: 722 Download |
MEASVAMAML ECTASLPSTL CTSSSGKISS SVSGTGLACF PMQGRSWAKL KQCHGGMWKG 60 AHRRTVITRA QVGKKGPAGG GGRKDRGVML DESKKLLAMQ KELLDKIEER QKLLSSSGQP 120 SASIGVDQLS EPKPSISQST VEVSEASSST QTAPSETSDR SGSAVAQPYS PGISMPDGQQ 180 KESTDFHSDH GRVGTAGNVS EMPQPAAVEA EAAAPSEAEK PPPLAGPNVM NVIVVAAECA 240 PWSKTGGLGD VVGALPKALA RRGHRVMVVA PRYSNYNDAW ETGIRRIYNV SGQDMEVGYF 300 HCFLDGVDYV FIDNPIFHAY ANNIYGGSRE DVLNRMILLS KAAVETPWHV PCGGVCYGDG 360 NLVFIANDWH TALVPVYLQA HYRDNGYMKF ARSVLVIHNM AHQGRGPLKD YGKLGLPDHY 420 ISKFRLYDPQ GGEHNNIFMA GLITAHRIVT VSHGYAWEVQ TPEGGWGLDG VIRDHNWKLR 480 GVVNGIDDKE WNPDLDVHLK SDGYTNYDIE TLDSGKAACK AALQKELGFP VRPEVPLLGF 540 IGRLDSQKGI DIIAQAMPWL VTQDIQLVML GTGRKDYEDM LRHFEGAYRD KVRGWVGFSV 600 QTAHRITAGV DILLMPSRFE PCGLNQLYAM RYGTVPVVHA VGGLKDTVQQ FNPFNESGLG 660 WTFDGLNADA FIHALGNAMW TYLDFKTSWK GIQQRGMSQN LSWDHAAQQY EEVLLAAKYT 720 W* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 2.0e-93 | 230 | 718 | 509 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 1.0e-133 | 230 | 712 | 495 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 3.0e-172 | 230 | 713 | 494 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 231 | 714 | 493 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 230 | 717 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV25894.1 | 0 | 72 | 721 | 58 | 751 | starch synthase isoform II [Manihot esculenta] |
GenBank | ACN39858.1 | 0 | 90 | 721 | 90 | 760 | unknown [Picea sitchensis] |
RefSeq | XP_001754221.1 | 0 | 230 | 721 | 1 | 492 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001757452.1 | 0 | 230 | 721 | 1 | 492 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778218.1 | 0 | 230 | 721 | 1 | 492 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 230 | 715 | 10 | 509 | A Chain A, Crystal Structure Of The Lin0763 Protein From Listeria Innocua. Northeast Structural Genomics Consortium Target Lkr23 |
PDB | 3vue_A | 0 | 230 | 715 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 230 | 713 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 230 | 713 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 230 | 713 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO445868 | 438 | 285 | 722 | 0 |
HO777841 | 307 | 416 | 722 | 0 |
HO777841 | 186 | 226 | 411 | 0 |
HO390058 | 459 | 265 | 722 | 0 |
HO781048 | 395 | 328 | 722 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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