| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s130_43V6.1 |
| Family | GH2 |
| Protein Properties | Length: 1234 Molecular Weight: 138676 Isoelectric Point: 5.6216 |
| Chromosome | Chromosome/Scaffold: 130 Start: 251487 End: 258762 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 172 | 1096 | 0 |
| EYVCSLAGLWKFHLACCPEEVPEQFSSVGFDDSSWGSLPVPSNWQVHGHDRPIYTNIVYPFPINPPFVPSENPTGCYRTSFRVPSDWTGRRLFLNFEAVD SAFYVWVNGAKIGYSQDSRLPSDWDITDCCHFGEENVLAVQVMRWSDGSYLEDQDHWWLSGIHRNVLIYSKPQVMLADYFVKTDVENDFLSATVKVEVTV EGPREMIANSKLCHYTTEAVLFEEFDFQGDFKMPSEAAHLQPQGLDSAMIGCHAHTILTAKLQGPKLWSAEHPNLYTLVVLLKDPSGAVIDCEACRVGVR KISTRPKELLVNGEPVVIRGVNRHEHHPRLGKTNIEACMIKDITLMKQHNINAVRNSHYPMHSRWYELCDLFGLYMVDEANLETHGFDPEPWAWPERQLT FDPKWANAFLQRMINMVERDKNHASIIFWSLGNEAGYGPNHQAMAGWTRGRDSTRLLHYEGGGSRTTSTDVVCPMYTRVWDIIKIAEDPSESRPVILCEY SHAMGNSNGNIQAYWDAIDGIHGLQGGFIWDWADQGLLKEGKDGVKYWAYGGDFGDVPHDLNFCLNGLIWPNRRPHPALEEVKHAYQPIGIFLKDGTIEI WNKHFFTPLDYVKFSWSLSADGSVLESGTLDLPAIEPTKKHYLKLNSGPWASRWKEAEANEIFLDITAYLSAPTRWADAGHVLASEQMELPVSKHAQRQV LSASSKPALSVEEAEWVLKVKPAGGEDWEIQFDKKKGLLSSWKVNGTCVLSNGPLPCFWRAPTDNDKGGSVLSYVSQWKANGLDTLTCTGCERFRVEKLS DSTLLLKAVIFMEPKSEEPPPPQVSESQTGDVDKDTEKSIKAQFAEMNEERARRDSSLGFKIKVQYIVFGDGNIVTSYDVEPPSRIPTLPRVGVQFNIDK ECSEVEWYGRGPFECYPDRKSAARV | |||
| Full Sequence |
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| Protein Sequence Length: 1234 Download |
| MSLPTILITG SAIDSVALAR KTSSSVLRGD FSYPCGQFLF RNRAGFGLDR CISAHVINCS 60 QAPGITNKEN DCVRAAAQNS TQPSEGGLNG PMAKDRKVPE VRRRDWEDPM TVEWNKRNAH 120 VPLHCHTTIV GALKFWQQRS HTDFRAAEEA VWEEEAVEAA LQSADSWIQG LEYVCSLAGL 180 WKFHLACCPE EVPEQFSSVG FDDSSWGSLP VPSNWQVHGH DRPIYTNIVY PFPINPPFVP 240 SENPTGCYRT SFRVPSDWTG RRLFLNFEAV DSAFYVWVNG AKIGYSQDSR LPSDWDITDC 300 CHFGEENVLA VQVMRWSDGS YLEDQDHWWL SGIHRNVLIY SKPQVMLADY FVKTDVENDF 360 LSATVKVEVT VEGPREMIAN SKLCHYTTEA VLFEEFDFQG DFKMPSEAAH LQPQGLDSAM 420 IGCHAHTILT AKLQGPKLWS AEHPNLYTLV VLLKDPSGAV IDCEACRVGV RKISTRPKEL 480 LVNGEPVVIR GVNRHEHHPR LGKTNIEACM IKDITLMKQH NINAVRNSHY PMHSRWYELC 540 DLFGLYMVDE ANLETHGFDP EPWAWPERQL TFDPKWANAF LQRMINMVER DKNHASIIFW 600 SLGNEAGYGP NHQAMAGWTR GRDSTRLLHY EGGGSRTTST DVVCPMYTRV WDIIKIAEDP 660 SESRPVILCE YSHAMGNSNG NIQAYWDAID GIHGLQGGFI WDWADQGLLK EGKDGVKYWA 720 YGGDFGDVPH DLNFCLNGLI WPNRRPHPAL EEVKHAYQPI GIFLKDGTIE IWNKHFFTPL 780 DYVKFSWSLS ADGSVLESGT LDLPAIEPTK KHYLKLNSGP WASRWKEAEA NEIFLDITAY 840 LSAPTRWADA GHVLASEQME LPVSKHAQRQ VLSASSKPAL SVEEAEWVLK VKPAGGEDWE 900 IQFDKKKGLL SSWKVNGTCV LSNGPLPCFW RAPTDNDKGG SVLSYVSQWK ANGLDTLTCT 960 GCERFRVEKL SDSTLLLKAV IFMEPKSEEP PPPQVSESQT GDVDKDTEKS IKAQFAEMNE 1020 ERARRDSSLG FKIKVQYIVF GDGNIVTSYD VEPPSRIPTL PRVGVQFNID KECSEVEWYG 1080 RGPFECYPDR KSAARVGTYS KEVKDLHVPY IVPGENGGRA DVRWVAFTSK TKGVGLLAIS 1140 GEDSPPMQMS ASFYTSQELD RATHEEELQQ GDKIEVHLDH KHMGIGGDDS WTPCVHPQYL 1200 LPPELYHFSI RFCPLIGPTS PLEISRNQLE NVS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 4.0e-93 | 896 | 1212 | 318 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| pfam02836 | Glyco_hydro_2_C | 2.0e-109 | 476 | 762 | 300 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 9.0e-159 | 176 | 1098 | 932 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 103 | 1214 | 1139 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 177 | 1191 | 1020 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001045421.1 | 0 | 104 | 1229 | 18 | 1115 | Os01g0952600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_680128.1 | 0 | 104 | 1229 | 17 | 1105 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | XP_001770793.1 | 0 | 92 | 1233 | 1 | 1105 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002266400.1 | 0 | 100 | 1231 | 13 | 1114 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002266434.1 | 0 | 100 | 1231 | 13 | 1115 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3muy_4 | 0 | 101 | 1213 | 11 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_3 | 0 | 101 | 1213 | 11 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_2 | 0 | 101 | 1213 | 11 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_1 | 0 | 101 | 1213 | 11 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 1jz2_D | 0 | 92 | 1213 | 2 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BJ870524 | 273 | 404 | 676 | 0 |
| HO804274 | 389 | 216 | 594 | 0 |
| EG397069 | 274 | 482 | 755 | 0 |
| EL444301 | 300 | 519 | 818 | 0 |
| HO804274 | 47 | 588 | 633 | 0.0000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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