| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s150_16V6.1 |
| Family | GT41 |
| Protein Properties | Length: 764 Molecular Weight: 84575.6 Isoelectric Point: 4.5729 |
| Chromosome | Chromosome/Scaffold: 150 Start: 240788 End: 248007 |
| Description | peroxin 5 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT41 | 510 | 719 | 9.7e-22 |
| EAVLALEAEVLKNPDNAEGWRLLGITHAENDDDRQAIASMVKARDADPSNLEVLLALGVSHTNELEQDEALRYLRGWLQHHPKYGALVPGNVSEQLIPSE VEGLFLEAAQMSPEDSDIHTVLGVIYNLSRNYVKAISSFERALQLKPRDYSLWNKLGATQANSSRSAEAIYAYQEALDLKPNYVRAWSNMGIGYANQGLY EESIRYYVRA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 764 Download |
| MAFRDLVMGG AGCAVPGQDG ASSSNPLGGL ADSIIGSASK TQERIREMPG LAGASQAGPQ 60 FGRNGPLTSL PGSEFNQAQW HDGQVPEYMR GFQSADPREF TDAWNQSVER WPPPPQLSTV 120 PGNQEGALFS EFDSIYGQQA GPSGAPLLDA PPQRVLNNFL HSFFDSSRTN APFPAVRLPE 180 LGLSQADKRR IRDRSHIMGR HIFADKGDTF VDSQVNGLLH SLDIDESLGA QTRGPLAGQI 240 PEFEQLWKEG FAQSNMQVVP RPPMSLGTQW ANEFHSQVGP SGAPQGWADE FDNLQTGNNW 300 ANQMQEQQSL SHLRNGQMGN MAGMEQTRSL VQTLSQNQDP KFQSSKFLQF VSKMSRGELI 360 VEDNQVKSAT TNADAWANEF QQQHPESWAA EFTAGEHQFR GDTWANEFAR GKPEPVTTND 420 AWVDEFSKLG VKDWADEFGD QMARGALGDD VSSEWVDSYD QFVEESVRGE QMKAGSSRFV 480 YQFADNNPYV GHPNPLKEGQ ELFRRGLLSE AVLALEAEVL KNPDNAEGWR LLGITHAEND 540 DDRQAIASMV KARDADPSNL EVLLALGVSH TNELEQDEAL RYLRGWLQHH PKYGALVPGN 600 VSEQLIPSEV EGLFLEAAQM SPEDSDIHTV LGVIYNLSRN YVKAISSFER ALQLKPRDYS 660 LWNKLGATQA NSSRSAEAIY AYQEALDLKP NYVRAWSNMG IGYANQGLYE ESIRYYVRAL 720 EMNPKADNAW QYLRISLSIA SRNDLLDAVE RKDLSALAKE FPL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00189 | TPR | 4.0e-6 | 527 | 656 | 130 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 1.0e-7 | 496 | 592 | 97 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 7.0e-13 | 613 | 691 | 79 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 3.0e-13 | 661 | 750 | 90 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 6.0e-22 | 631 | 725 | 95 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC69177.1 | 0 | 1 | 763 | 1 | 741 | peroxisomal targeting signal 1 receptor [Nicotiana tabacum] |
| EMBL | CBI39871.1 | 0 | 1 | 763 | 1 | 736 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_001772418.1 | 0 | 198 | 763 | 1 | 568 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002266713.1 | 0 | 1 | 763 | 1 | 741 | PREDICTED: similar to peroxisomal targeting signal 1 receptor; PTS1 receptor; Pex5p [Vitis vinifera] |
| RefSeq | XP_002330566.1 | 0 | 1 | 763 | 1 | 750 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3r9a_D | 0 | 481 | 763 | 13 | 326 | A Chain A, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p |
| PDB | 3r9a_B | 0 | 481 | 763 | 13 | 326 | A Chain A, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p |
| PDB | 2c0m_F | 0 | 481 | 763 | 4 | 317 | A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor |
| PDB | 2c0m_C | 0 | 481 | 763 | 4 | 317 | A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor |
| PDB | 2c0m_B | 0 | 481 | 763 | 4 | 317 | A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| FC330233 | 269 | 155 | 423 | 0 |
| FC351463 | 263 | 185 | 447 | 0 |
| FC419926 | 275 | 304 | 578 | 0 |
| FC376152 | 250 | 154 | 403 | 0 |
| FC450696 | 259 | 464 | 722 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
