CAZyme Information

Basic Information
SpeciesPhyscomitrella patens
Cazyme IDPp1s15_181V6.2
FamilyGH13
Protein PropertiesLength: 793 Molecular Weight: 90472.2 Isoelectric Point: 6.3782
ChromosomeChromosome/Scaffold: 15 Start: 1173286 End: 1180286
Descriptionstarch branching enzyme 2.1
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH133056307.7e-27
  LPRIKANNYNTIQLMAIMEHAYYGCFGYHVTNFFAASSRCGTPEDLKYLIDKAHSMGLRVLMDVVHSHASTNAVDGLAGYDLGQSSQESYFHTGARGYHT
  LWDSRLFNYGSWEVQRFLLSNLRWWMDEYKFDGFRFDGVTSMLYHHHGLNMCFTGNYHEYFSEATDVEAVMYLMLANELVHKLLPDATVIAEDVSGMPTL
  CRSVEEGGVGFDYRLAMAIPDKWIQYLKERKDEDWSMGDIVYTLTNRRYTEPCVGYAESHDQSMVGDKTFAFLLMDKEMYFSMTATQPANLIVDRGIALH
  KMIHFITMALGGEGYLNFMGNEFGHP
Full Sequence
Protein Sequence     Length: 793     Download
MLAVPACHGR SSPAATHASL QSSSQVEGRG ITSSDVLGWQ RLTLKRSMWG VGGLSRSLNF    60
KSSSPPTVRA TSIKTEKTEK PDKPAKSAEP AEPAQLAGWK DLNGMEKLGV VEVDPMLAPH    120
QNHLRYRYRE FLKRKMEIEK VEGSLENFAK GYDKFGFTRD GDCIVYQEWA PAAAAAQLIG    180
DFNNWDGSNH KMERDEFGVW SIRLPDEDGV PAIPHGSKVK FRMQKGDGTW VDRIPAWIKY    240
AVVDPNVFAA YYDGVYWDPP AEEKYEFKHA RPPKPAAPLI YEAHVGMSSK EPVVASYRQF    300
ADEVLPRIKA NNYNTIQLMA IMEHAYYGCF GYHVTNFFAA SSRCGTPEDL KYLIDKAHSM    360
GLRVLMDVVH SHASTNAVDG LAGYDLGQSS QESYFHTGAR GYHTLWDSRL FNYGSWEVQR    420
FLLSNLRWWM DEYKFDGFRF DGVTSMLYHH HGLNMCFTGN YHEYFSEATD VEAVMYLMLA    480
NELVHKLLPD ATVIAEDVSG MPTLCRSVEE GGVGFDYRLA MAIPDKWIQY LKERKDEDWS    540
MGDIVYTLTN RRYTEPCVGY AESHDQSMVG DKTFAFLLMD KEMYFSMTAT QPANLIVDRG    600
IALHKMIHFI TMALGGEGYL NFMGNEFGHP EWIDFPRQGN NWSFDKCRRR WDLVDQDHLR    660
YKFMNNFNRA MIALEEEFQF VSSRKQYISC QHEYDKLIVF ERGDLVFVFN FHPTNTYSGL    720
KVGCEIPGKY RICLDSDAAE FGGHSRVDHN VDHFTSPEGE PGRPETNYNN RPHSFMVMAP    780
SRSCQVYYKV PE* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
PLN02960PLN029603.0e-812120692+
PLN03244PLN032447.0e-140210787583+
PLN02447PLN024470104792689+
cd11321AmyAc_bac_euk_BE0262669408+
PLN02960PLN029600210788580+
Gene Ontology
GO TermDescription
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
GO:0043169cation binding
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCAA54308.10105792907771,4-alpha-glucan branching enzyme [Manihot esculenta]
EMBLCBI18866.1010679294780unnamed protein product [Vitis vinifera]
RefSeqXP_001754772.101057921688predicted protein [Physcomitrella patens subsp. patens]
RefSeqXP_001762321.101057861682predicted protein [Physcomitrella patens subsp. patens]
RefSeqXP_001763855.101057921688predicted protein [Physcomitrella patens subsp. patens]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3aml_A01057928695A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L
PDB3amk_A01057928695A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L
PDB3vu2_B01057928695A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L
PDB3vu2_A01057928695A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L
PDB1m7x_D5.99756e-4316674329577A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
Metabolic Pathways
Pathway NameReactionECProtein Name
starch biosynthesisRXN-7710EC-2.4.1.181,4-α-glucan branching enzyme
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
HO6191676001947920
HO7945366901107870
HO7776386361647870
HO4581234043987900
HO777638471131590.007
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_066_00053.1Aquca_027_00415.5Aquca_027_00415.4Aquca_027_00415.3Aquca_027_00415.2
Aquca_027_00415.1Aquca_015_00400.6Aquca_015_00400.5Aquca_015_00400.2Aquca_015_00400.1
Aquca_015_00400.3Aquca_015_00400.4
Arabidopsis lyrata873536321348908239
Arabidopsis thalianaAT3G20440.3AT3G20440.2AT2G36390.1AT5G03650.1
Brachypodium distachyonBradi1g41970.2Bradi1g41970.1Bradi1g29850.2Bradi1g29850.1Bradi5g09170.2
Bradi5g09170.1Bradi3g44760.1
Brassica rapaBra035782Bra005269Bra017241Bra009521
Carica papayaevm.model.supercontig_5.62
Capsella rubellaCarubv10012936mCarubv10022617mCarubv10000235m
Chlamydomonas reinhardtiiCre06.g270100.t1.3Cre10.g444700.t1.1Cre06.g289850.t1.3Cre08.g373450.t1.1
Citrus clementinaCiclev10007401mCiclev10011063mCiclev10000406mCiclev10000374mCiclev10000272m
Ciclev10000256m
Citrus sinensisorange1.1g035501morange1.1g002609morange1.1g004765morange1.1g004253morange1.1g003474m
orange1.1g003390morange1.1g003230morange1.1g003226m
Cucumis sativusCucsa.378410.2Cucsa.378410.1Cucsa.077550.3Cucsa.077550.1Cucsa.077550.2
Eucalyptus grandisEucgr.F03487.1Eucgr.A01533.1Eucgr.F01770.1
Fragaria vescamrna30233.1-v1.0-hybridmrna08644.1-v1.0-hybridmrna08646.1-v1.0-hybrid
Glycine maxGlyma18g10385.1Glyma03g35020.2Glyma03g35020.1Glyma19g37750.2Glyma19g37750.1
Glyma04g01950.2
Gossypium raimondiiGorai.009G406400.4Gorai.011G196000.5Gorai.011G196000.4Gorai.011G196000.3Gorai.011G196000.2
Gorai.011G196000.12Gorai.011G196000.1Gorai.011G196000.7Gorai.011G196000.6Gorai.011G196000.13
Gorai.002G172100.7Gorai.002G172100.5Gorai.002G172100.3Gorai.002G172100.2Gorai.002G172100.1
Gorai.009G441800.2Gorai.009G441800.1Gorai.009G406400.6Gorai.009G406400.5Gorai.009G406400.3
Gorai.009G406400.2Gorai.009G406400.1Gorai.002G241400.7Gorai.002G241400.6Gorai.002G241400.5
Gorai.002G241400.4Gorai.002G241400.2Gorai.002G241400.1Gorai.005G113800.3Gorai.005G113800.2
Gorai.005G113800.1
Linum usitatissimumLus10000912Lus10023878Lus10014382Lus10016012Lus10012264
Malus domesticaMDP0000218396MDP0000148418MDP0000214735MDP0000177786
Manihot esculentacassava4.1_006199mcassava4.1_004366mcassava4.1_003773mcassava4.1_001701mcassava4.1_001686m
cassava4.1_002337mcassava4.1_002172mcassava4.1_002171mcassava4.1_001826mcassava4.1_001598m
cassava4.1_001595m
Medicago truncatulaMedtr7g104080.1
Mimulus guttatusmgv1a001162mmgv1a001301mmgv1a001932m
Oryza sativaLOC_Os02g32660.2LOC_Os06g26234.3LOC_Os06g26234.2LOC_Os06g26234.1LOC_Os02g32660.1
LOC_Os06g51084.8LOC_Os06g51084.7LOC_Os06g51084.6LOC_Os06g51084.5LOC_Os06g51084.4
LOC_Os06g51084.3LOC_Os06g51084.2LOC_Os06g51084.1
Panicum virgatumPavirv00035568mPavirv00058932mPavirv00002278mPavirv00067040mPavirv00061484m
Pavirv00061483mPavirv00061485m
Physcomitrella patensPp1s200_23V6.1Pp1s15_181V6.1Pp1s54_189V6.2Pp1s54_189V6.1Pp1s64_78V6.1
Phaseolus vulgarisPhvul.006G047000.1Phvul.001G187600.1Phvul.009G011000.1
Picea abiesMA_10430611g0010
Populus trichocarpaPotri.006G115100.5Potri.001G359200.1Potri.006G115100.6Potri.006G115100.4Potri.006G115100.3
Potri.006G115100.2Potri.006G115100.1Potri.005G251000.5Potri.005G251000.4Potri.005G251000.3
Potri.005G251000.2Potri.005G251000.1Potri.005G251000.6
Prunus persicappa016544mppa001312mppa001929m
Ricinus communis29762.m00048630170.m01435927496.m000095
Setaria italicaSi008087mSi016350mSi009379mSi009312mSi005911m
Si006006mSi006081m
Selaginella moellendorffii165481437348437417
Sorghum bicolorSb03g027310.1Sb04g021540.1Sb06g015360.1Sb10g030776.1
Thellungiella halophilaThhalv10020019mThhalv10016249mThhalv10012785mThhalv10012784mThhalv10012679m
Vitis viniferaGSVIVT01037695001GSVIVT01033801001GSVIVT01008673001
Volvox carteriVocar20012173mVocar20015251mVocar20002436mVocar20007338m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)