| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s16_66V6.1 |
| Family | GH28 |
| Protein Properties | Length: 510 Molecular Weight: 56031.3 Isoelectric Point: 5.2563 |
| Chromosome | Chromosome/Scaffold: 16 Start: 390113 End: 392603 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 133 | 465 | 0 |
| NKACDARNGEVYVPSGYTFLVYPSTFSGPCRCNIRFAVEGTIVAPEEISAWDGLNVRYWLLFIHLDYFTLKGSGTFNGRGYNWWVCKEDKTCERAPTTVT VLKSSHVTVRTVTFVDAPQVHINFQDITEGHVKGITVLAPWSSPNTDGIHISGTTDFVVRNCYVATGDDCVSIVSGSRNIGVYDTYCGIGCHGISVGSLG YNGQHANVTQVQVKNCQLDSTTNGLRIKTWQGGTGIASNIDFRNIKMSNVSNPIIIDQFYCPPSQTEEPCSNLSTAVHIDLVKFTNITGTSASATAVKLA CSDAEPCTNIRMKDINLTRMDGNTARAVCSNAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 510 Download |
| MIPMNQRRFI GLLACLVVIY VRRDNFHCNA QGECAQSILG DDDNDYSDYV DDLENNDFEH 60 KLQQLQLVLS NALELRDERY LFNGGPWKLD RGVLMNRLDD EFVGYTERFN VLLDGAVGDG 120 ITNDTNAFLA AWNKACDARN GEVYVPSGYT FLVYPSTFSG PCRCNIRFAV EGTIVAPEEI 180 SAWDGLNVRY WLLFIHLDYF TLKGSGTFNG RGYNWWVCKE DKTCERAPTT VTVLKSSHVT 240 VRTVTFVDAP QVHINFQDIT EGHVKGITVL APWSSPNTDG IHISGTTDFV VRNCYVATGD 300 DCVSIVSGSR NIGVYDTYCG IGCHGISVGS LGYNGQHANV TQVQVKNCQL DSTTNGLRIK 360 TWQGGTGIAS NIDFRNIKMS NVSNPIIIDQ FYCPPSQTEE PCSNLSTAVH IDLVKFTNIT 420 GTSASATAVK LACSDAEPCT NIRMKDINLT RMDGNTARAV CSNAVGVAMG VQIPPTCLTV 480 NASALSSMPV QLCLHSLRLL RQLWDVAFP* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 8.0e-82 | 115 | 487 | 378 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-84 | 115 | 474 | 368 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 5.0e-86 | 89 | 483 | 398 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-89 | 145 | 464 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-120 | 115 | 483 | 374 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF61444.1 | 0 | 115 | 485 | 69 | 440 | AF138858_1 polygalacturonase [Solanum lycopersicum] |
| GenBank | AAU43991.1 | 0 | 102 | 478 | 25 | 407 | unknown protein [Oryza sativa Japonica Group] |
| GenBank | ABR18059.1 | 0 | 115 | 478 | 95 | 458 | unknown [Picea sitchensis] |
| RefSeq | NP_565232.1 | 0 | 115 | 485 | 59 | 431 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_001755021.1 | 0 | 95 | 509 | 1 | 419 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-21 | 204 | 450 | 115 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-17 | 104 | 466 | 16 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1hg8_A | 0.000000000000001 | 277 | 426 | 165 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 0.00000000000002 | 165 | 450 | 35 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
