| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s171_119V6.3 |
| Family | GT47 |
| Protein Properties | Length: 548 Molecular Weight: 61526.7 Isoelectric Point: 6.4646 |
| Chromosome | Chromosome/Scaffold: 171 Start: 726202 End: 730017 |
| Description | Exostosin family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT47 | 128 | 413 | 0 |
| KNLRIYLYPASQNYNFTQYEYGMNPSEMVSELGVETSSTTDTFFNLLVESKRFVTDDADGAHLYFLPISIDRVWAAVGPAKVGEHLRHYLQWLRNTYKLW DLSLGADHFYFSSHAYDPINHRNNLELTKNAIQVASSPLRRNQNFFPHKDISLPSYKSQHIAEVQNLVGASQRPKLVFVSSPPEDIDPIVASVIQKWTSD SDFHVESADQPSPPFEKLLSSRFCVSVSPQAMLNVVDSLRLGCVPVLIADSIIYDLPFQDVLNWKEFSVVLGVKESPNLKTLLSSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 548 Download |
| MSSFPKQRVA IITFVYCFAV AIICGTWSPD GNFGRSSGFA LELQPVLGEP EDGSSISSSY 60 GALTVGARKL TEAKAETDPS EEKKVSSDSI FSLEITEDDH VVLDLRSTLP RLYHSPEFFA 120 MNYNDMAKNL RIYLYPASQN YNFTQYEYGM NPSEMVSELG VETSSTTDTF FNLLVESKRF 180 VTDDADGAHL YFLPISIDRV WAAVGPAKVG EHLRHYLQWL RNTYKLWDLS LGADHFYFSS 240 HAYDPINHRN NLELTKNAIQ VASSPLRRNQ NFFPHKDISL PSYKSQHIAE VQNLVGASQR 300 PKLVFVSSPP EDIDPIVASV IQKWTSDSDF HVESADQPSP PFEKLLSSRF CVSVSPQAML 360 NVVDSLRLGC VPVLIADSII YDLPFQDVLN WKEFSVVLGV KESPNLKTLL SSISTDEYRK 420 MQYLGHQASK HMEWNDPPKP WDAFHMTLHE LWVRRHSIKY ARRNEDSPSQ PQRRPPQGRC 480 SRTALLEKWE CSVGPGLKSG DVRGALHAAL GVDLQRLALT FLPRVSPDSK DLKIKGGLLV 540 AYFEAGP* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 8.0e-38 | 128 | 413 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001046127.1 | 0 | 110 | 460 | 61 | 402 | Os02g0187200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_001753053.1 | 0 | 52 | 467 | 57 | 466 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001774055.1 | 0 | 48 | 395 | 67 | 409 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001774096.1 | 0 | 110 | 460 | 1 | 351 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002325425.1 | 0 | 126 | 459 | 1 | 321 | predicted protein [Populus trichocarpa] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
