Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s173_162V6.1 |
Family | PL1 |
Protein Properties | Length: 426 Molecular Weight: 47080.9 Isoelectric Point: 6.8656 |
Chromosome | Chromosome/Scaffold: 173 Start: 937028 End: 939966 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 143 | 347 | 0 |
QSEPLWIVFSRNMNIKLKQELIMNSYKTLDGRGHNVHIAGGACLTVQYVNNIIIHNIHIHDCKSTGPADVRSSPSHYGQRGKSDGDAINIFGSHDIWVDH CYFSRCADGLVDVIQGSTDVTISNNYFEDHDKVMLLGAHPKDSMDKGMRVTIAFNHFGENLIERMPRCRQGTFHIVNNNYQGWGMYAIGGSEDPVINSEG NRFFA |
Full Sequence |
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Protein Sequence Length: 426 Download |
MGWWIWQRAL CAAVFLFILS EWRFCGALRL LPPSSSAQKV QMLGASPGLK AEEARHEAPV 60 DTHLRSNLTK RSLAGCGNGN PVDDCWRCNS NWDQNRQQLA SCSLGFGKNA IGGKNGQIYV 120 VTDDSDEDVV NPKEGTLRYG VIQSEPLWIV FSRNMNIKLK QELIMNSYKT LDGRGHNVHI 180 AGGACLTVQY VNNIIIHNIH IHDCKSTGPA DVRSSPSHYG QRGKSDGDAI NIFGSHDIWV 240 DHCYFSRCAD GLVDVIQGST DVTISNNYFE DHDKVMLLGA HPKDSMDKGM RVTIAFNHFG 300 ENLIERMPRC RQGTFHIVNN NYQGWGMYAI GGSEDPVINS EGNRFFAPDA RFKKEVTKRI 360 DDGGNYDEDS WNWRSSGDMF LNGAFFTKSG APSANTQIYG KATSFSARPA VMVEGMTNDA 420 GPLAL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-25 | 89 | 345 | 273 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-58 | 160 | 345 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-65 | 154 | 349 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001766376.1 | 0 | 5 | 425 | 5 | 427 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769269.1 | 0 | 76 | 425 | 1 | 348 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774203.1 | 0 | 67 | 425 | 1 | 359 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783165.1 | 0 | 71 | 425 | 10 | 364 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785953.1 | 0 | 64 | 425 | 30 | 384 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 80 | 421 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 80 | 421 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-20 | 108 | 345 | 19 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 4e-16 | 163 | 323 | 128 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000000002 | 153 | 324 | 136 | 318 | A Chain A, Bacillus Subtilis Pectate Lyase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DC908227 | 256 | 171 | 426 | 0 |
DC956394 | 219 | 208 | 426 | 0 |
DC932826 | 227 | 1 | 227 | 0 |
BY977134 | 215 | 1 | 215 | 0 |
FG606120 | 337 | 61 | 395 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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