y
Basic Information | |
---|---|
Species | Physcomitrella patens |
Cazyme ID | Pp1s175_19V6.1 |
Family | CE8 |
Protein Properties | Length: 368 Molecular Weight: 40357.9 Isoelectric Point: 9.7132 |
Chromosome | Chromosome/Scaffold: 175 Start: 108620 End: 110501 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 76 | 361 | 0 |
IVVDKSGKGDFRKIQQAIDAVPVGNKKRFVIQIKNGVYREKLLVPKTKANIHFKCSGRRTILVWGDTAEMAGGTSKSASTAVESDNFLATDCTFVNSAPA PPGGAVGKQAVALRVQGDKAAFYRCYFYGAQDTLYAKEGRQYYRNCYIQGSIDWIFGNARALFHKCHINSIAFKNSGSITAQKRESNKEATGFSFVGCKI TGSGTIYLGRAWGTHSRVVFIRCYMQNMILPIGWQDWNDPARHKTVYYGEYLCSGPGANRKGRAKWSRALTKKEAEPFSTVKFING |
Full Sequence |
---|
Protein Sequence Length: 368 Download |
MASLRSYGYV LLFGLVAACL VAASGANDAD DIDFDTWMGM MKSNIEKGEN EVPDQEALDV 60 ADDAVGSQAS GKSRVIVVDK SGKGDFRKIQ QAIDAVPVGN KKRFVIQIKN GVYREKLLVP 120 KTKANIHFKC SGRRTILVWG DTAEMAGGTS KSASTAVESD NFLATDCTFV NSAPAPPGGA 180 VGKQAVALRV QGDKAAFYRC YFYGAQDTLY AKEGRQYYRN CYIQGSIDWI FGNARALFHK 240 CHINSIAFKN SGSITAQKRE SNKEATGFSF VGCKITGSGT IYLGRAWGTH SRVVFIRCYM 300 QNMILPIGWQ DWNDPARHKT VYYGEYLCSG PGANRKGRAK WSRALTKKEA EPFSTVKFIN 360 GKNWLGW* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 1.0e-106 | 75 | 365 | 299 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-111 | 75 | 365 | 292 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-112 | 62 | 365 | 306 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 9.0e-113 | 10 | 365 | 365 | + pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-134 | 73 | 365 | 301 | + pectinesterase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001766064.1 | 0 | 72 | 365 | 9 | 290 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774315.1 | 0 | 80 | 365 | 1 | 286 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778325.1 | 0 | 1 | 367 | 1 | 370 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785149.1 | 0 | 84 | 365 | 1 | 277 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785334.1 | 0 | 60 | 367 | 1 | 305 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 76 | 365 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 77 | 365 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-20 | 86 | 359 | 18 | 334 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-20 | 86 | 359 | 18 | 334 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 3e-20 | 86 | 359 | 18 | 334 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |