| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s17_289V6.1 |
| Family | GH28 |
| Protein Properties | Length: 453 Molecular Weight: 49177.7 Isoelectric Point: 6.4288 |
| Chromosome | Chromosome/Scaffold: 17 Start: 1934183 End: 1936633 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 88 | 410 | 0 |
| AACQSESSVMVVPAYYVFVVGQITFKGPCKHNLTFQIEGVIIPPTDLAVWNKLSNKVQWIGFYKQVGMMLRGSGAINGLGEVWWSQPCKAADHGRQRCAS PTALKFYGCINVSVRDITIQDSPQMHLKFDNCQQVEVFNVSILSPGWSPNTDGIHLQNTGYALLQNLVIAAGDDCISLQTGTTDVTIRDVVCGPGHGISI GGLGQGGSQACVSNITVQDVLIKDTQNGVRIKTWQGGSGVVQHVTFDTVTVVNVQNPIVINQFYCDAKECQNDTAAVLISDIAYSNIRGTYDQARCHAPV YFACSDTVPCRNIKVDNVELLPA | |||
| Full Sequence |
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| Protein Sequence Length: 453 Download |
| MSRLGKRSSG FAFTSSEAHK APHAKKPHEK KVPHHKRDAG WVEGAPGPSS HEGKACMGEG 60 CTYDVMAFNA VGDGITDDTK AFQATWRAAC QSESSVMVVP AYYVFVVGQI TFKGPCKHNL 120 TFQIEGVIIP PTDLAVWNKL SNKVQWIGFY KQVGMMLRGS GAINGLGEVW WSQPCKAADH 180 GRQRCASPTA LKFYGCINVS VRDITIQDSP QMHLKFDNCQ QVEVFNVSIL SPGWSPNTDG 240 IHLQNTGYAL LQNLVIAAGD DCISLQTGTT DVTIRDVVCG PGHGISIGGL GQGGSQACVS 300 NITVQDVLIK DTQNGVRIKT WQGGSGVVQH VTFDTVTVVN VQNPIVINQF YCDAKECQND 360 TAAVLISDIA YSNIRGTYDQ ARCHAPVYFA CSDTVPCRNI KVDNVELLPA QANFFTSRPF 420 CWNSYGASDP LCYPPLCLID DPFVEESDDY FC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 9.0e-51 | 60 | 407 | 352 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-54 | 64 | 428 | 371 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-60 | 62 | 407 | 349 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-61 | 90 | 421 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-92 | 65 | 447 | 386 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK95305.1 | 0 | 60 | 449 | 77 | 470 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
| RefSeq | NP_175244.1 | 0 | 60 | 449 | 77 | 470 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_001755315.1 | 0 | 57 | 452 | 1 | 416 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002263668.1 | 0 | 59 | 452 | 79 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002318932.1 | 0 | 45 | 440 | 62 | 458 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-18 | 157 | 359 | 113 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 4e-17 | 42 | 427 | 2 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 4e-16 | 167 | 411 | 84 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-16 | 167 | 411 | 84 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-16 | 167 | 411 | 84 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BJ590378 | 146 | 308 | 453 | 0 |
| ES800057 | 357 | 108 | 435 | 0 |
| DW479564 | 315 | 70 | 379 | 0 |
| BJ590378 | 14 | 297 | 310 | 2.6 |
| BJ590378 | 11 | 269 | 279 | 2.6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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