Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s189_71V6.1 |
Family | GH35 |
Protein Properties | Length: 849 Molecular Weight: 94047.8 Isoelectric Point: 6.4706 |
Chromosome | Chromosome/Scaffold: 189 Start: 406504 End: 412498 |
Description | beta galactosidase 9 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 1 | 281 | 0 |
MWPSIIQHAKDGGADVVQTYVFWNGHEPEQGQYNFEGRYDLVKFIKLVKQAGLYFHLRIGPYVCAEWNFGGFPYWLKEIPGIVFRTDNEPFKVAMQGFTS KIVNLMKENELFSWQGGPIIMAQIENEYGDIESQFGDGGKRYVQWAADMALSLDTRVPWIMCKQEDAPANIINTCNGFYCDGWKPNTALKPILWTEDWNG WFQNWGQAAPHRPVEDNAFAVARFFQRGGSFQNYYMYFGGTNFARTAGGPFMTTTYDYDAPIDEYGLIRQPKWGHLKDLHA |
Full Sequence |
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Protein Sequence Length: 849 Download |
MWPSIIQHAK DGGADVVQTY VFWNGHEPEQ GQYNFEGRYD LVKFIKLVKQ AGLYFHLRIG 60 PYVCAEWNFG GFPYWLKEIP GIVFRTDNEP FKVAMQGFTS KIVNLMKENE LFSWQGGPII 120 MAQIENEYGD IESQFGDGGK RYVQWAADMA LSLDTRVPWI MCKQEDAPAN IINTCNGFYC 180 DGWKPNTALK PILWTEDWNG WFQNWGQAAP HRPVEDNAFA VARFFQRGGS FQNYYMYFGG 240 TNFARTAGGP FMTTTYDYDA PIDEYGLIRQ PKWGHLKDLH AAIKLCEPAL TAVDTVPQST 300 WIGSNQEAHE YSANGHCAAF LANIDSENSV TVQFQGESYV LPAWSVSILP DCKNVAFNTA 360 QIGAQTTVTR MRIAPSNSRG DIFLPSNTLV HDHISDGGVF ANLKWQASAE PFGIRGSGTT 420 VSNSLLEQLN ITKDTSDYLW YSTSITITSE GVTSDVSGTE ANLVLGTMRD AVHIFVNGKL 480 AGSAMGWNIQ VVQPITLKDG KNSIDLLSMT LGLQNYGAYL ETWGAGIRGS VSVTGLPYGN 540 LSLSTAEWSY QVGLRGEELK LFHNGTADGF SWDSSSFTNA SYLTWYKTTF DAPGGTDPVA 600 LDLGSMGKGQ AWINGHHLGR YFLMVAPQSG CETCDYRGAY NTNKCRTNCG EPSQRWYHIP 660 RAWLQATGNL LVLFEEIGGD ISKVSVVTRS AHAVCAHINE SQPPPIRTWR PHRSIDAFNN 720 PAEMLLECAA GQHITKIKFA SFGNPRGSCG HFQHGTCHAN KSMEAVRKVC IGKQQCYIPV 780 QRKFFGSIDP CPGVSKSLAV QVHCSPHKSP QASHEPVQPT YLDYQWQQPL GAYDNPSERK 840 PSLLPESY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1874 | LacA | 3.0e-15 | 1 | 273 | 317 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam02140 | Gal_Lectin | 4.0e-22 | 726 | 804 | 82 | + Galactose binding lectin domain. | ||
pfam01301 | Glyco_hydro_35 | 2.0e-139 | 1 | 283 | 298 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 1 | 805 | 812 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF31232.1 | 0 | 1 | 813 | 61 | 887 | beta-D-galactosidase [Persea americana] |
RefSeq | XP_001753645.1 | 0 | 1 | 844 | 65 | 917 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001775275.1 | 0 | 1 | 848 | 62 | 916 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002328900.1 | 0 | 1 | 804 | 66 | 880 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518051.1 | 0 | 1 | 805 | 70 | 887 | beta-galactosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 4e-37 | 2 | 279 | 39 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 6e-33 | 2 | 266 | 42 | 318 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 0.004 | 465 | 628 | 413 | 575 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 6e-33 | 2 | 266 | 42 | 318 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778160 | 701 | 1 | 692 | 0 |
HO780602 | 627 | 21 | 640 | 0 |
DC903824 | 253 | 157 | 409 | 0 |
HO795552 | 552 | 61 | 605 | 0 |
HO780602 | 35 | 644 | 678 | 0.000000006 |
Sequence Alignments (This image is cropped. Click for full image.) |
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