| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s18_221V6.1 |
| Family | GH28 |
| Protein Properties | Length: 482 Molecular Weight: 52865.4 Isoelectric Point: 5.38 |
| Chromosome | Chromosome/Scaffold: 18 Start: 1677445 End: 1682272 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 115 | 460 | 0 |
| DKGGVQLYIPAGRWLTGSIKLISHLTLFLENEATILGSQDLKDYPIIPGLPSYGRGRELPGPRHSSLINGEGLEDVVITGDNGTIDGQGAVWWDAFYNKT LDYTRGHLVELIDSSDILISNLTFRDSPFWTIHPVYCRNVVVKDMTILAPLDSPNTDGIDPDSSHNVCIEDCYISVGHDAIAIKSGWDEYGTSYGMPSKH IDVRRITVHSKTSAGIAFGSEMSGGISDVKVDHMMIFGARWGIRFKTGLGRGGYIRNVTVDNVDMHSVGTAIAFTGNYGEHPDENWNRTDYPVIENISIE NVVGENITHAGLFLGLPESPFHNIHLANIALDVKSESDDWNCSSVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 482 Download |
| MMRRLSFQSF QVLVLLLTCM SANNCRQTCT FGRPLLSGSA ESVSNGVVGT TTLSTGHESI 60 LKAVETEGSC ANNYKNWKNR PHSVSISEFG AVGDGKTLNT HAFENAMFYL RTYADKGGVQ 120 LYIPAGRWLT GSIKLISHLT LFLENEATIL GSQDLKDYPI IPGLPSYGRG RELPGPRHSS 180 LINGEGLEDV VITGDNGTID GQGAVWWDAF YNKTLDYTRG HLVELIDSSD ILISNLTFRD 240 SPFWTIHPVY CRNVVVKDMT ILAPLDSPNT DGIDPDSSHN VCIEDCYISV GHDAIAIKSG 300 WDEYGTSYGM PSKHIDVRRI TVHSKTSAGI AFGSEMSGGI SDVKVDHMMI FGARWGIRFK 360 TGLGRGGYIR NVTVDNVDMH SVGTAIAFTG NYGEHPDENW NRTDYPVIEN ISIENVVGEN 420 ITHAGLFLGL PESPFHNIHL ANIALDVKSE SDDWNCSSVA GTYFFVWPQP CSDFTKEEQK 480 T* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-22 | 78 | 471 | 414 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 5.0e-24 | 82 | 449 | 381 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 2.0e-26 | 81 | 392 | 327 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-28 | 175 | 422 | 257 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 8.0e-57 | 84 | 435 | 390 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001755533.1 | 0 | 80 | 471 | 1 | 393 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001756010.1 | 0 | 75 | 477 | 14 | 419 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001775589.1 | 0 | 1 | 477 | 4 | 479 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001779181.1 | 0 | 80 | 471 | 1 | 392 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001781065.1 | 0 | 64 | 481 | 29 | 446 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-38 | 58 | 446 | 4 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-38 | 58 | 446 | 4 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-38 | 58 | 446 | 4 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-38 | 58 | 446 | 4 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 5e-17 | 55 | 420 | 124 | 536 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
