| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s18_85V6.1 |
| Family | AA7 |
| Protein Properties | Length: 580 Molecular Weight: 62996.5 Isoelectric Point: 6.1201 |
| Chromosome | Chromosome/Scaffold: 18 Start: 408003 End: 415351 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| AA7 | 152 | 351 | 2.9e-25 |
| HSVEAIPDIVVYPKSQEEVVAIIKACAKYKIPVTPYAGGTSLEGHTMTLNRGVSINMNSMKKVKELHLEDMDVIVEPGIGWIELNEYLKPYGLFFPLDPG PGATIGGMCATRCSGSMAVRYGTMRDNVLSMKAVVANGDVVKTAARARKSAAGYDLTRLLIGSEGTLGVITEVTLRLQKIPEATVVAMCNFKNVGDAAAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 580 Download |
| MSHSRCASAL IRRYLRKDFG LRSAVSGSRC LATLSVSERY ERMTGSGSAS EGVGWRARAR 60 AVGGVVALTG LMSLVQMHQA AVSRCESVQT QIQNPIAVET ENPAPSKDES QSFCVGNVAP 120 LLAELRAALD EDRVVVDEED RKFHAKPWNT YHSVEAIPDI VVYPKSQEEV VAIIKACAKY 180 KIPVTPYAGG TSLEGHTMTL NRGVSINMNS MKKVKELHLE DMDVIVEPGI GWIELNEYLK 240 PYGLFFPLDP GPGATIGGMC ATRCSGSMAV RYGTMRDNVL SMKAVVANGD VVKTAARARK 300 SAAGYDLTRL LIGSEGTLGV ITEVTLRLQK IPEATVVAMC NFKNVGDAAA VAIASMHSGI 360 QVSRVELLDD VMMKAINMAN DKNYPEKPTL MFELVGTEAY TQEQTARIQR IVEDHNGSDF 420 VFADTPIEKE ELWKIRKEAF WSTFVLRPDA EALVTDVCVP LSRLAECISA TKDSLLASSL 480 PSTLLAHAGD GNFHAIILFD PKNKEEVDEA LKLSNDMVHA SLSMEGTCTG EHGVGIGKMK 540 YLEKELGPEA LKMMGTIKTA LDPSNLMNPG KIIPEKFCY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 3.0e-55 | 156 | 574 | 423 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 5.0e-61 | 331 | 572 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 1.0e-89 | 161 | 571 | 415 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 1.0e-110 | 144 | 576 | 446 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 143 | 579 | 437 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK24997.1 | 0 | 121 | 579 | 123 | 580 | unknown [Picea sitchensis] |
| RefSeq | NP_001142976.1 | 0 | 132 | 578 | 108 | 554 | hypothetical protein LOC100275430 [Zea mays] |
| RefSeq | XP_001755583.1 | 0 | 165 | 579 | 6 | 421 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002322755.1 | 0 | 121 | 579 | 22 | 480 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524111.1 | 0 | 121 | 579 | 98 | 555 | d-lactate dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 8.96831e-44 | 160 | 573 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 8.96831e-44 | 160 | 573 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 8.96831e-44 | 160 | 573 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 8.96831e-44 | 160 | 573 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 8.96831e-44 | 160 | 573 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| photorespiration | RXN-969 | EC-1.1.3 | glycolate oxidase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| EX265038 | 297 | 173 | 469 | 0 |
| EX440808 | 322 | 143 | 464 | 0 |
| DT747637 | 272 | 201 | 472 | 0 |
| DY305587 | 295 | 212 | 506 | 0 |
| EX261606 | 322 | 229 | 546 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |