| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s194_34V6.1 |
| Family | GH28 |
| Protein Properties | Length: 452 Molecular Weight: 49477.6 Isoelectric Point: 5.3782 |
| Chromosome | Chromosome/Scaffold: 194 Start: 159178 End: 162136 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 83 | 427 | 0 |
| ADKGGAELYIPAGRWLTGSIRLISHLTLFLESGATILGSEDFNDYPLIPGLPSYGRGRELPGSRYSSLINGDGLEDVIITGNNGTIDGQGAVWWSSFRSK TLEHTRGHLLELIEAQDILISNLTFQNSPFWTIHPVYSKNVVVKRVTILNPLNSPNTDGIDPDSSQYVCIEDCYISVGDDAISIKSGWDQYGTGFGMPSK YIRIQRVVAFSHTSAGISFGSEMSGGISDIEVDDMVITNSRWGVRFKTSVGRGAYIRNVTVNNIVMHTVRTAIAVMGNYGEHPDENWNRTAYPVIENILV GNIVGENITQAGLLLGLPDAPFHDIHLTKVVLDTRTTKQGPWNCS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 452 Download |
| MVGPSLADDC RGSNGARDSS IPMDFHQSIF GHVKSKESCA HTVNDWERRP YSFSIIDFGA 60 VGDGTTLNTH AFERAMLSLS NYADKGGAEL YIPAGRWLTG SIRLISHLTL FLESGATILG 120 SEDFNDYPLI PGLPSYGRGR ELPGSRYSSL INGDGLEDVI ITGNNGTIDG QGAVWWSSFR 180 SKTLEHTRGH LLELIEAQDI LISNLTFQNS PFWTIHPVYS KNVVVKRVTI LNPLNSPNTD 240 GIDPDSSQYV CIEDCYISVG DDAISIKSGW DQYGTGFGMP SKYIRIQRVV AFSHTSAGIS 300 FGSEMSGGIS DIEVDDMVIT NSRWGVRFKT SVGRGAYIRN VTVNNIVMHT VRTAIAVMGN 360 YGEHPDENWN RTAYPVIENI LVGNIVGENI TQAGLLLGLP DAPFHDIHLT KVVLDTRTTK 420 QGPWNCSWVT GFYNFVLPKP CPELTMENSN G* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-21 | 52 | 422 | 381 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-23 | 48 | 427 | 391 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 1.0e-24 | 29 | 442 | 437 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-30 | 151 | 391 | 246 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-57 | 53 | 419 | 405 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001755533.1 | 0 | 49 | 441 | 1 | 393 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001756010.1 | 0 | 48 | 448 | 18 | 420 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001775589.1 | 0 | 1 | 451 | 33 | 483 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001779181.1 | 0 | 49 | 441 | 1 | 392 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001781065.1 | 0 | 33 | 447 | 29 | 442 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.80909e-45 | 19 | 415 | 4 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.80909e-45 | 19 | 415 | 4 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.80909e-45 | 19 | 415 | 4 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.80909e-45 | 19 | 415 | 4 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 2e-20 | 33 | 389 | 141 | 536 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FC355559 | 215 | 238 | 452 | 0 |
| HO797483 | 396 | 49 | 444 | 0 |
| FC378890 | 253 | 98 | 350 | 0 |
| HO778855 | 360 | 49 | 407 | 0 |
| HO797919 | 376 | 49 | 424 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
