Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s198_26V6.1 |
Family | CE8 |
Protein Properties | Length: 783 Molecular Weight: 85274.1 Isoelectric Point: 7.1378 |
Chromosome | Chromosome/Scaffold: 198 Start: 145441 End: 150973 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 116 | 402 | 0 |
IIVDQNGLGQFTGISAALDSIPSDIFRRYRITIQVNAGIYREKVYIGKDKPFITMVGIGNPVIVWDDNKTNANNRTFESATFGVGGDFFMAVNMTFQNSA PAPESGAIGMQAVALRITSDVAVFYRCSILGNQDSLYDHNGRHFFKECFIQGSIDFIFGDGLSIYYRCELNVVPTSSGAVTAQKRQNATDNSGFSFQYCW ITGGAGQVYLGRAWGPFSRVVYSFTWMNDIIYAPGWYDWGNYTRQATVYYGQYKCTGPGANQAGRVAWSHELTDLEVVPFLSLSFVD |
Full Sequence |
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Protein Sequence Length: 783 Download |
MSLLHVTIIA ILLVSFPPTI TCSRHRLDNH QSTEQIADRQ PLRPARDDLA SGEFAKWVKR 60 IGEKHMRKQA MRAKAKNNPQ LLDLDPSTAE PDLSEIYPGM KQYLDWESVV SSATYIIVDQ 120 NGLGQFTGIS AALDSIPSDI FRRYRITIQV NAGIYREKVY IGKDKPFITM VGIGNPVIVW 180 DDNKTNANNR TFESATFGVG GDFFMAVNMT FQNSAPAPES GAIGMQAVAL RITSDVAVFY 240 RCSILGNQDS LYDHNGRHFF KECFIQGSID FIFGDGLSIY YRCELNVVPT SSGAVTAQKR 300 QNATDNSGFS FQYCWITGGA GQVYLGRAWG PFSRVVYSFT WMNDIIYAPG WYDWGNYTRQ 360 ATVYYGQYKC TGPGANQAGR VAWSHELTDL EVVPFLSLSF VDGEAWVPHA KLEPRPGLGA 420 PHSTHRGKGM ERGEEERERE SLVLWCTSHN PSLVTSQPST ASQPASLQLH PALKQAANLE 480 SPPPPPPSQP ALALAILSST SVVVTIVVVV DVVVVVVQGL VMAGRLMALA CARPSALPCA 540 SPPTTPGITS QHCSQSLPGI AIRRPRLGVR CLDQNAQGLG KQFESDYGLC GNQLKRSQPV 600 NAIFGSDTNS SASASDNDDD LPPAGCSRIK LELKKPLGIA FEEDKFGNVM VGEVIEGGNA 660 YKSGLVDAGD QLIATSAIVY SSEDEYQGVV VRKGMQKVRL NVRGERFETV IAAIGTHPYY 720 IPVLQCSSCF LPFLKYVTFS PAAVMCLYHC AENKPMCTVK VALEFQKCKP VVAESANGSA 780 TS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 4.0e-95 | 116 | 407 | 301 | + pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-95 | 111 | 407 | 299 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-98 | 112 | 407 | 306 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-102 | 116 | 418 | 306 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-137 | 53 | 409 | 365 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR36293.1 | 0 | 3 | 407 | 9 | 389 | unknown [Zea mays] |
RefSeq | XP_001758990.1 | 0 | 113 | 407 | 2 | 295 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001775877.1 | 0 | 124 | 407 | 1 | 284 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001775878.1 | 0 | 441 | 782 | 12 | 305 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002330522.1 | 0 | 4 | 407 | 9 | 379 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 116 | 418 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-40 | 117 | 418 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.000000000008 | 190 | 285 | 96 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.000000000008 | 190 | 285 | 96 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.000000000008 | 190 | 285 | 96 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |