| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s1_550V6.1 |
| Family | PL1 |
| Protein Properties | Length: 544 Molecular Weight: 58847.2 Isoelectric Point: 5.5868 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3192646 End: 3194796 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 268 | 465 | 0 |
| IFAKSMTIQLKGELFISAYKTVDGRGAEVHIVGGSQISILRTNNVILHGLHIHDIRPSGPTTIRVSPSKVIRRNKSEGDGLHIWGSRDVWIDHCYLAKAT DGLIDVTRGSTMVTISNCFLEQHDKTMLLGADPDHTEDRNMRVTVAFNKFGPGLVQRLPRCRFGVFHVLNNDYSAGWGKYAIGGSEDPTILSQGNRFN | |||
| Full Sequence |
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| Protein Sequence Length: 544 Download |
| MVSGRVASLL TVLIVLASQW KSPHARSMPV DFDNQEYVPT DQEYPEFPQN TGSNAQSDTP 60 VFAAQTGDAF EYNSNNGNYD ANNWDAETFA SEDLVASPSQ AAQSNADAAT EGELSYDVFI 120 DFPESVREPP STSFADDNVY HSKAAYMNDE VFYDTSAADI IYKASDDGLS LATADLNATD 180 ADDMLASLAK AMGGCGTGNP IDDCWRCDPN WRSHRQALSN CATGFGRNAI GGKNGPIYTV 240 TNNGDDAKNP QPGTLRYGVT RNGPLWIIFA KSMTIQLKGE LFISAYKTVD GRGAEVHIVG 300 GSQISILRTN NVILHGLHIH DIRPSGPTTI RVSPSKVIRR NKSEGDGLHI WGSRDVWIDH 360 CYLAKATDGL IDVTRGSTMV TISNCFLEQH DKTMLLGADP DHTEDRNMRV TVAFNKFGPG 420 LVQRLPRCRF GVFHVLNNDY SAGWGKYAIG GSEDPTILSQ GNRFNPAGKK EVTQRINDGG 480 SSYGGWQRWN WASSGDIFLG GSYFTGSGAR ATSASVYAKA YSTSSRPAHM VPAITRSAGP 540 LKL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 9.0e-27 | 231 | 543 | 334 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-58 | 268 | 464 | 205 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-60 | 273 | 464 | 203 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001751580.1 | 0 | 192 | 543 | 1 | 352 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001757625.1 | 0 | 195 | 541 | 2 | 349 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001763554.1 | 0 | 176 | 542 | 2 | 367 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001771554.1 | 0 | 192 | 543 | 1 | 352 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001784519.1 | 0 | 195 | 541 | 17 | 364 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 199 | 539 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 199 | 539 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_B | 5e-18 | 276 | 467 | 78 | 290 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_A | 5e-18 | 276 | 467 | 78 | 290 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1ooc_B | 5e-18 | 276 | 467 | 78 | 290 | A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 25 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FG606120 | 329 | 195 | 519 | 0 |
| FC426281 | 255 | 195 | 448 | 0 |
| HO778688 | 351 | 195 | 541 | 0 |
| CK243724 | 286 | 195 | 476 | 0 |
| ES797549 | 271 | 195 | 464 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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