| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s1_97V6.1 |
| Family | CBM57 |
| Protein Properties | Length: 627 Molecular Weight: 68174.4 Isoelectric Point: 6.3521 |
| Chromosome | Chromosome/Scaffold: 1 Start: 540874 End: 546014 |
| Description | receptor like protein 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 221 | 360 | 4.6e-23 |
| DRYWATDTTLFTPGSSVNSLHTKYNISKFNNPPNIYPEAIYQSATTTGPENKLSYTIPVLPNQNYSIWLHFAEIEDSVTAPNERVFNVMANGLPLFQVVD IVKMAGGVRTALVLNKTVLVEGKTLTISLEPLAGEISINA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 627 Download |
| MGRACSVLLI AALVCASQVL FTSAADGAPF ALRIACGSDS ESYSPETGYL WSKDMNYTGG 60 SSGNLTTVSR IASQLKTIRY FGMPDGSENC YNLSVPNGQY LIRMYFSFGF KDNSGREPEF 120 EISMEGTLVY SLTRGWSTVV DNEYVDSLVH INDGAATICF HSSGHGSPVI ASIEILQIND 180 DAYNMGTPSS NFIMRTVKRV TAGAEKSGYG SSLQADPWGG DRYWATDTTL FTPGSSVNSL 240 HTKYNISKFN NPPNIYPEAI YQSATTTGPE NKLSYTIPVL PNQNYSIWLH FAEIEDSVTA 300 PNERVFNVMA NGLPLFQVVD IVKMAGGVRT ALVLNKTVLV EGKTLTISLE PLAGEISINA 360 FEVYQLIPRE QPTSSDNVWA LQSMKQGLEL PSRVGWNGDP CIPQLHAWYG VNCEFDAAVG 420 TWFITGLALD SQGLKGRIDD SIVNLQRLQS LNMSNNVLTG VIPESLGHVS SLVTLDLSYN 480 RLNGSIPASL GQLPKLQELL LNDNQLVGEV PPALGAFPIR GGVLNLANND GLCGVGLRSC 540 NTMSHRQKSG IVIGVIIGFM VLILGGYLCW KRRMNMLRGA QRLPRDAPYA KARTTFVRDV 600 QMARNTLANH FSRPSPYSES TPLNPH* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam11721 | Malectin | 9.0e-6 | 32 | 170 | 162 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| PLN00113 | PLN00113 | 4.0e-13 | 427 | 540 | 140 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 1.0e-18 | 219 | 365 | 156 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| pfam12819 | Malectin_like | 9.0e-56 | 34 | 366 | 360 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
| PLN03150 | PLN03150 | 0 | 13 | 622 | 616 | + hypothetical protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABH07898.1 | 0 | 32 | 610 | 1 | 586 | leucine-rich repeat family protein [Solanum lycopersicum] |
| EMBL | CBI30598.1 | 0 | 28 | 604 | 23 | 605 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_001752825.1 | 0 | 29 | 626 | 1 | 597 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002305781.1 | 0 | 32 | 605 | 1 | 578 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509445.1 | 0 | 3 | 610 | 8 | 616 | serine-threonine protein kinase, plant-type, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ogq_A | 0.000000001 | 434 | 517 | 89 | 172 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 1ogq_A | 0.000004 | 427 | 515 | 106 | 195 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 1ogq_A | 0.0002 | 406 | 523 | 36 | 154 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 1ogq_A | 0.003 | 423 | 540 | 175 | 312 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rj0_A | 0.000000001 | 427 | 514 | 396 | 483 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
