Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s204_112V6.1 |
Family | PL1 |
Protein Properties | Length: 440 Molecular Weight: 48353.2 Isoelectric Point: 6.1909 |
Chromosome | Chromosome/Scaffold: 204 Start: 577991 End: 580374 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 140 | 340 | 0 |
IVFDRNMKIKLKNELILTSYKTIDGRGANVHLSDGAGLKIQFVQNIIVHGIHFHNIVPTGPAVIRSSPTHVGHRDKTDGTAIAIFTSHDVWVDHCFFSKA DDGLVDAIRGSTRITVSNCYFSNHDKAMLFGAHKQDTEDRDMTVTVAFNHFGPNLMQRLPRMRFGYCHVVNNDYPSGWGMYAIGGSEDPTFLSEGNRFVA S |
Full Sequence |
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Protein Sequence Length: 440 Download |
MEWFLLAAVA ATAWWAHCTQ AHLLMDEDLT MTQLPASADL FLSKVLETID PHYVERKKNS 60 TRRILASANG NPVDDCWRSD SNWHNDRQAL ADCAIGFGKN AAGGKEGRVY VVTDDSDDNV 120 VNPKEGTLRY GVLQEEPLWI VFDRNMKIKL KNELILTSYK TIDGRGANVH LSDGAGLKIQ 180 FVQNIIVHGI HFHNIVPTGP AVIRSSPTHV GHRDKTDGTA IAIFTSHDVW VDHCFFSKAD 240 DGLVDAIRGS TRITVSNCYF SNHDKAMLFG AHKQDTEDRD MTVTVAFNHF GPNLMQRLPR 300 MRFGYCHVVN NDYPSGWGMY AIGGSEDPTF LSEGNRFVAS KNKEVTKRVD DGGNDYGGEE 360 NWNWASSGDL LFNGATFESS GANGGASVYN KAMSLSARPA SLVEIITSDS GPLMCTAGVQ 420 ICPFLQLSFK PTPTQLQNS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12708 | Pectate_lyase_3 | 0.0003 | 142 | 265 | 125 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
COG3866 | PelB | 8.0e-30 | 158 | 337 | 192 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-60 | 151 | 337 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-69 | 145 | 341 | 208 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001774203.1 | 0 | 59 | 413 | 1 | 357 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001776371.1 | 0 | 53 | 439 | 6 | 392 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001776441.1 | 0 | 57 | 421 | 2 | 372 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001784519.1 | 0 | 70 | 418 | 20 | 369 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785953.1 | 0 | 59 | 413 | 33 | 382 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 71 | 411 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 71 | 411 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-21 | 140 | 339 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.0000000000002 | 161 | 313 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 1pcl_A | 0.0000000000006 | 149 | 345 | 71 | 284 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |