Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s206_50V6.1 |
Family | PL1 |
Protein Properties | Length: 422 Molecular Weight: 46278.4 Isoelectric Point: 6.226 |
Chromosome | Chromosome/Scaffold: 206 Start: 221650 End: 225246 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 149 | 332 | 0 |
LWIIFSQDTSIALTQELIMNSYKTIDGRGYNVQISGGAGITIQGPAMVRDSPAHYGHRLRSDGSAISIFAGTNVWLDHLYLSDCTTNLISAIEASTFITV SNSYFTNHDKVMLFGAHPEDTFDTVMQVTVAYNHFGTGLTQRMPRCRFGYFHVFNNDYLDWKMYAIGGSQNPTILSEGNRFKAS |
Full Sequence |
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Protein Sequence Length: 422 Download |
MREGRRTSIT GELILVCLAS LSIVPQLHHA TSTEGSVNKL HTHGKTELGA EEQVKAHFNE 60 RGKMQGSEVR RQLATSACQT GNSIDDCWRC DSSWETNRQS LADCAIGFGK NAVGGKHGSL 120 YVVTNDSDDD VVNPSYGTLR WAAIQTEPLW IIFSQDTSIA LTQELIMNSY KTIDGRGYNV 180 QISGGAGITI QGPAMVRDSP AHYGHRLRSD GSAISIFAGT NVWLDHLYLS DCTTNLISAI 240 EASTFITVSN SYFTNHDKVM LFGAHPEDTF DTVMQVTVAY NHFGTGLTQR MPRCRFGYFH 300 VFNNDYLDWK MYAIGGSQNP TILSEGNRFK ASDNNNSKEV TKRVADGGND FGGWENWNWR 360 SSDDMFLNGA FFQDSGSSNI DSSLYEKATS FSAKPSSHVE TLTANAGPFQ CGLGVLLSRI 420 H* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-21 | 169 | 329 | 175 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-52 | 162 | 329 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-59 | 163 | 333 | 187 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR17766.1 | 0 | 14 | 414 | 6 | 423 | unknown [Picea sitchensis] |
RefSeq | XP_001769269.1 | 0 | 78 | 410 | 1 | 347 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774203.1 | 0 | 70 | 409 | 4 | 357 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001776371.1 | 0 | 58 | 417 | 6 | 374 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001776441.1 | 0 | 64 | 421 | 1 | 376 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 82 | 407 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 82 | 407 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.0000000001 | 208 | 329 | 113 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000004 | 209 | 306 | 187 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000001 | 172 | 306 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |