| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s20_252V6.2 |
| Family | GH28 |
| Protein Properties | Length: 483 Molecular Weight: 53141.2 Isoelectric Point: 7.0097 |
| Chromosome | Chromosome/Scaffold: 20 Start: 1736551 End: 1740029 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 113 | 460 | 0 |
| DSDGAQLTIPAGRWLTGSINLISHLTLFLENGANILGSEDFNDYPIIPELPSYGRGRELPGARYSSLINGDNLEDVTITGENGTIDGQGGVWWKAFRNKT LDYSRSHVLELIGSQDILIFNLTFQNSPSWTIHPVYCKNVVIKNLTVLNPNDSPNTDGIDPDSSQHVCIEDCYISVGDDAISIKSGWDQYGISYGMPSKH IQIRRIVSASKTFGIHAGVSFGSEMSGGISNVKVDDMVLYGARWGVRFKTSPGRGGYIKHVAVHNLLLHSVKTAVAFMANYGQHPDDNWNRTAYPVIENI VIKNIVGENITQAGILQGLPESPFRHIHLKTIALDVRSTKNVWNCSWV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 483 Download |
| MIRRYSYQSL RFLLFLLSCV GPEKFWPTCI VDHSLAEGFS QPDGIGGVMS PMDLHTSFFG 60 HHTSKQSCAH IVNVGKPRPL RVSITDFGAV GDGKTLNTKA FENALQYLHS NADSDGAQLT 120 IPAGRWLTGS INLISHLTLF LENGANILGS EDFNDYPIIP ELPSYGRGRE LPGARYSSLI 180 NGDNLEDVTI TGENGTIDGQ GGVWWKAFRN KTLDYSRSHV LELIGSQDIL IFNLTFQNSP 240 SWTIHPVYCK NVVIKNLTVL NPNDSPNTDG IDPDSSQHVC IEDCYISVGD DAISIKSGWD 300 QYGISYGMPS KHIQIRRIVS ASKTFGIHAG VSFGSEMSGG ISNVKVDDMV LYGARWGVRF 360 KTSPGRGGYI KHVAVHNLLL HSVKTAVAFM ANYGQHPDDN WNRTAYPVIE NIVIKNIVGE 420 NITQAGILQG LPESPFRHIH LKTIALDVRS TKNVWNCSWV SGSYFFVVPQ PCADLTRQNI 480 TL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-24 | 74 | 473 | 421 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 8.0e-25 | 82 | 451 | 385 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-30 | 180 | 419 | 249 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-30 | 79 | 427 | 365 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 1.0e-57 | 82 | 389 | 332 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001755533.1 | 0 | 78 | 472 | 1 | 393 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001756010.1 | 0 | 78 | 482 | 19 | 423 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001775589.1 | 0 | 1 | 479 | 4 | 480 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001779181.1 | 0 | 78 | 472 | 1 | 392 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001781065.1 | 0 | 67 | 480 | 34 | 444 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3.00004e-41 | 82 | 439 | 28 | 403 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3.00004e-41 | 82 | 439 | 28 | 403 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3.00004e-41 | 82 | 439 | 28 | 403 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3.00004e-41 | 82 | 439 | 28 | 403 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 3e-19 | 78 | 421 | 153 | 536 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
