y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s215_36V6.2 |
Family | CE8 |
Protein Properties | Length: 327 Molecular Weight: 35195.7 Isoelectric Point: 8.0808 |
Chromosome | Chromosome/Scaffold: 215 Start: 242103 End: 244594 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 82 | 320 | 0 |
TVGKKGSGAKYTKVKAAIKSIPKGNSVRCVIRIAKGFYKEKIEIPKDKPYITIEGAGAGVTILSYGDTAEEAGSTSQSASFAVMSDYFVAKDLTFENSSP PPPGGAVGQQAVAFRIEGDKAQFYRVAFLGAQDTLYDKQGRHYFKDCYIQGSIDFVFGNGQSYYETCHLHSIANPGSGSLTAQKKMTKAETSGFSFVRCN VTGNGPIYIGRAWGPYSRVVLLYTDISAPIIPAGWYNWG |
Full Sequence |
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Protein Sequence Length: 327 Download |
MAISRAALLC TLVLATGFFL TVSSQTVPTP EEDFDAWIAR NQAKYEAQNS ESTVLDTQTL 60 PGGDFSVEAT PSPPQEATCI RTVGKKGSGA KYTKVKAAIK SIPKGNSVRC VIRIAKGFYK 120 EKIEIPKDKP YITIEGAGAG VTILSYGDTA EEAGSTSQSA SFAVMSDYFV AKDLTFENSS 180 PPPPGGAVGQ QAVAFRIEGD KAQFYRVAFL GAQDTLYDKQ GRHYFKDCYI QGSIDFVFGN 240 GQSYYETCHL HSIANPGSGS LTAQKKMTKA ETSGFSFVRC NVTGNGPIYI GRAWGPYSRV 300 VLLYTDISAP IIPAGWYNWG DPAREK* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-73 | 82 | 326 | 245 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 8.0e-76 | 82 | 319 | 244 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 2.0e-77 | 71 | 326 | 263 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-85 | 1 | 326 | 329 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 6.0e-108 | 82 | 326 | 251 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27989.1 | 0 | 82 | 325 | 16 | 264 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001777108.1 | 0 | 82 | 326 | 1 | 245 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778320.1 | 0 | 79 | 326 | 22 | 269 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001782802.1 | 0 | 83 | 326 | 2 | 245 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002514210.1 | 0 | 82 | 325 | 86 | 334 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.04467e-44 | 83 | 319 | 11 | 252 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-33 | 83 | 319 | 7 | 248 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-20 | 65 | 296 | 20 | 271 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 7e-16 | 77 | 252 | 1 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 7e-16 | 77 | 252 | 1 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |