Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s215_36V6.3 |
Family | CE8 |
Protein Properties | Length: 267 Molecular Weight: 28767.4 Isoelectric Point: 6.5213 |
Chromosome | Chromosome/Scaffold: 215 Start: 242103 End: 244594 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 82 | 255 | 0 |
TVGKKGSGAKYTKVKAAIKSIPKGNSVRCVIRIAKGFYKEKIEIPKDKPYITIEGAGAGVTILSYGDTAEEAGSTSQSASFAVMSDYFVAKDLTFENSSP PPPGGAVGQQAVAFRIEGDKAQFYRVAFLGAQDTLYDKQGRHYFKDCYIQGSIDFVFGNGQSYYEVKTCQLHSL |
Full Sequence |
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Protein Sequence Length: 267 Download |
MAISRAALLC TLVLATGFFL TVSSQTVPTP EEDFDAWIAR NQAKYEAQNS ESTVLDTQTL 60 PGGDFSVEAT PSPPQEATCI RTVGKKGSGA KYTKVKAAIK SIPKGNSVRC VIRIAKGFYK 120 EKIEIPKDKP YITIEGAGAG VTILSYGDTA EEAGSTSQSA SFAVMSDYFV AKDLTFENSS 180 PPPPGGAVGQ QAVAFRIEGD KAQFYRVAFL GAQDTLYDKQ GRHYFKDCYI QGSIDFVFGN 240 GQSYYEVKTC QLHSLATLQS LRETLN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01095 | Pectinesterase | 7.0e-44 | 82 | 241 | 160 | + Pectinesterase. | ||
PLN02304 | PLN02304 | 5.0e-48 | 71 | 256 | 186 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 7.0e-54 | 82 | 257 | 182 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 9.0e-57 | 1 | 256 | 258 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 7.0e-67 | 82 | 257 | 182 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001777108.1 | 0 | 82 | 257 | 1 | 174 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778320.1 | 0 | 79 | 257 | 22 | 198 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778325.1 | 0 | 34 | 256 | 44 | 251 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001782802.1 | 0 | 83 | 257 | 2 | 174 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785334.1 | 0 | 83 | 260 | 18 | 189 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5e-30 | 83 | 254 | 11 | 174 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-20 | 83 | 252 | 7 | 168 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 7e-17 | 65 | 252 | 20 | 217 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.00000000000003 | 77 | 254 | 1 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000000000003 | 77 | 254 | 1 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |