Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s217_58V6.1 |
Family | GT47 |
Protein Properties | Length: 421 Molecular Weight: 48219.5 Isoelectric Point: 8.7937 |
Chromosome | Chromosome/Scaffold: 217 Start: 377624 End: 380714 |
Description | FRA8 homolog |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 71 | 367 | 0 |
AIRIYVYDLPPKFNEDWLVDERCSNHLFASEVAIHKILLTSPIRTLDPYEADFFFMPVYVSCKFSPKTGFPWLGHAPKLMQAAVNHVSTKMEFWNRSWGR DHIFVAAHDYGACFHTLETQAIAQGIPQFMRNSLILQTFGVKGFHPCQAAEHIQIPPYISPSVAVSYVKDPLEHQQRDIFAYFRGKMEINPKNVSGLLYS KGIRTVLYKRFSRNKRFVLKRHRVDNSQQEMLRSTFCLCPLGWAPWSPRIVEAVTYGCIPVIIADNISLPYSHTIDWSSISLTVPEHDVPKLDKILI |
Full Sequence |
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Protein Sequence Length: 421 Download |
MPLENPKSGY QALLRTSLRA MPLGETNNAL HEEKEVRKSD KEWQLKPDHF TLFKVSSFDT 60 TPFNPLNLTN AIRIYVYDLP PKFNEDWLVD ERCSNHLFAS EVAIHKILLT SPIRTLDPYE 120 ADFFFMPVYV SCKFSPKTGF PWLGHAPKLM QAAVNHVSTK MEFWNRSWGR DHIFVAAHDY 180 GACFHTLETQ AIAQGIPQFM RNSLILQTFG VKGFHPCQAA EHIQIPPYIS PSVAVSYVKD 240 PLEHQQRDIF AYFRGKMEIN PKNVSGLLYS KGIRTVLYKR FSRNKRFVLK RHRVDNSQQE 300 MLRSTFCLCP LGWAPWSPRI VEAVTYGCIP VIIADNISLP YSHTIDWSSI SLTVPEHDVP 360 KLDKILIGVA VTNLTAIQRN LWRGENRRAL LFTDPLVQGD ATWHIFDLLS STLDRSFANQ 420 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 8.0e-71 | 72 | 369 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33322.1 | 0 | 67 | 417 | 83 | 434 | secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] |
RefSeq | XP_001754437.1 | 0 | 68 | 417 | 1 | 350 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001777222.1 | 0 | 55 | 420 | 3 | 368 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781950.1 | 0 | 68 | 420 | 1 | 353 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002275679.1 | 0 | 56 | 414 | 83 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797103 | 346 | 72 | 417 | 0 |
CN203510 | 228 | 67 | 294 | 0 |
CK261693 | 315 | 96 | 410 | 0 |
BY945611 | 180 | 1 | 180 | 0 |
DY287013 | 316 | 104 | 417 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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