Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s21_30V6.1 |
Family | GT47 |
Protein Properties | Length: 979 Molecular Weight: 108514 Isoelectric Point: 4.3441 |
Chromosome | Chromosome/Scaffold: 21 Start: 193682 End: 198296 |
Description | root hair specific 8 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 574 | 921 | 0 |
SCEGKYVYVYDLPPEFNTDIAARCDSLFPWFNLCDYFVDSGIGKPVNTASDGKQIMVPADRWFNTHQYALELVSHARIKKYKCLTEDPDQASLFYIPFYA GLDVIRWHFAKNTTNEKRDELTWKLLSWLEQKPSWSRRGGFDHVMVLGKISWDFHRNLKYGSWGSSMLELPQTQNVTKVLIERNPWVKKEIAAPHPTFFH PKSAADIDTWLNHIRSQERFSLVTFVGKGRPGTTNVRQQLIEQCRNASSEADCRIVECDNNLCQNPAYVNGAFLSTHFCMQPVGDSPTRRSVFDSLITGC IPVLFHPCTAHVQYLWHLPANETSWSVYISEDDVKEGTANVVEILKKI |
Full Sequence |
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Protein Sequence Length: 979 Download |
MGYNSFRSSS PSSKGNAGRH RLKFLVIVCM TMVFVLSSST FLAPFSNLMR ISACNIGPDG 60 GVLARESDQF SAYTLQHQET LHVQDGRMED GNSQESNQIS DVVKVTEWFG ESQSTIPVQR 120 EVRGEEPVST TLEQEEIDES ETKENDIIAK EDSTPSHGGD NVGTGTSEEL VTSTLRETVD 180 VASNASDGKN VVEQVPTESI DNGEVSNQKP VSSSAEEETP AITETKKEEV QNVSDTSGEL 240 VSSTLEEKLD VSPNTNDDKT VGEHVPTEST YNVEVTNQEP AFASAEEETP AVTEARNEEV 300 RNVSETSEEL MSSTLEEKVD VAPNANDDKN VEEQAPTEPT DNGEVTNQEP VSTSSEGETP 360 ATTESKNEEV QKDSDTPLQS SDSLQERSEE LVLAAPKVEN PSVSEQKNEG SLVAVESAQS 420 DDNDQEWKEH KTTKQEPIFT TPGLETPAVI EAKNEENSEG VNSTQSPDNG AVLEEKNEWN 480 QNQNPVPGSQ GEQIHAATEP KNDASLTEQV STPSAESTEA WFKEADIRPF RNEGDKPGNR 540 SSPPNIALRR IADNIRSHSL AYSTRKDENQ ADSSCEGKYV YVYDLPPEFN TDIAARCDSL 600 FPWFNLCDYF VDSGIGKPVN TASDGKQIMV PADRWFNTHQ YALELVSHAR IKKYKCLTED 660 PDQASLFYIP FYAGLDVIRW HFAKNTTNEK RDELTWKLLS WLEQKPSWSR RGGFDHVMVL 720 GKISWDFHRN LKYGSWGSSM LELPQTQNVT KVLIERNPWV KKEIAAPHPT FFHPKSAADI 780 DTWLNHIRSQ ERFSLVTFVG KGRPGTTNVR QQLIEQCRNA SSEADCRIVE CDNNLCQNPA 840 YVNGAFLSTH FCMQPVGDSP TRRSVFDSLI TGCIPVLFHP CTAHVQYLWH LPANETSWSV 900 YISEDDVKEG TANVVEILKK IPNHERDAMR ETIIKTIVPG LLYGAPGSDV SPYRDAFDIT 960 IENLLHRVSQ LSDGNAPS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5271 | MDN1 | 0.008 | 85 | 380 | 308 | + AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | ||
COG5271 | MDN1 | 9.0e-5 | 129 | 520 | 405 | + AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | ||
pfam03016 | Exostosin | 1.0e-57 | 574 | 921 | 364 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_176534.2 | 0 | 574 | 970 | 278 | 662 | catalytic [Arabidopsis thaliana] |
RefSeq | XP_001756054.1 | 0 | 574 | 978 | 1 | 405 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001757088.1 | 0 | 551 | 973 | 3 | 424 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001759310.1 | 0 | 574 | 965 | 1 | 392 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778302.1 | 0 | 550 | 965 | 5 | 410 | predicted protein [Physcomitrella patens subsp. patens] |