| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s21_68V6.2 |
| Family | GH16 |
| Protein Properties | Length: 502 Molecular Weight: 56573.1 Isoelectric Point: 6.6904 |
| Chromosome | Chromosome/Scaffold: 21 Start: 389633 End: 391703 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH16 | 26 | 260 | 5.1e-24 |
| DNFTETGCLEKNWRHPMGKGKWKWDAKSNKEIHWEPACAQVVNDARLGKSVLRVCVFSDWFHRIDRLATKEKFGYGYYETRCRFLGAEGMHCAFWLLPDG MWDKPVPPGQIDGGIEIDVVEHRGRDGSGADVSRQGNTAVHWGGYGANHKSVAYKQMNLPDEPSAWATYGLLHEPGGLKWYWNGREVNSARVWSPMPNGI YFSTEVNESGGWAGQDLSSYGPLQSPAGYIEVDYC | |||
| Full Sequence |
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| Protein Sequence Length: 502 Download |
| MATQSRAHDP GVAPKAGHSW RNNFWDNFTE TGCLEKNWRH PMGKGKWKWD AKSNKEIHWE 60 PACAQVVNDA RLGKSVLRVC VFSDWFHRID RLATKEKFGY GYYETRCRFL GAEGMHCAFW 120 LLPDGMWDKP VPPGQIDGGI EIDVVEHRGR DGSGADVSRQ GNTAVHWGGY GANHKSVAYK 180 QMNLPDEPSA WATYGLLHEP GGLKWYWNGR EVNSARVWSP MPNGIYFSTE VNESGGWAGQ 240 DLSSYGPLQS PAGYIEVDYC GFWELCDYAT QLSAPLPCED TAVSTNSGTK QSSHDLLSHT 300 FTVRHTLRFD DLERLRGEGD GEQFWFVPFP AGRTIRNPQK AQTLLSVETK HIASLITEWK 360 GIQFAHEDHT LEVKEVCVDG LQLRYAKRAY SSPHILVINV MVHDSGAAEE ESRQLRDKVA 420 EVERQGRETA NRLQDRIGHL EHQLATELTQ LKELVQSSVS TTQSLHEHVY RDDQNLPDGL 480 SSKISAVREN VSKLYRGVHK S* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd02178 | GH16_beta_agarase | 2.0e-8 | 93 | 263 | 182 | + Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold. | ||
| pfam00722 | Glyco_hydro_16 | 9.0e-9 | 91 | 261 | 179 | + Glycosyl hydrolases family 16. | ||
| COG2273 | SKN1 | 1.0e-9 | 94 | 251 | 166 | + Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] | ||
| cd08023 | GH16_laminarinase_like | 3.0e-16 | 91 | 215 | 128 | + Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans. | ||
| cd00413 | Glyco_hydrolase_16 | 3.0e-31 | 26 | 263 | 244 | + glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001756169.1 | 0 | 1 | 501 | 894 | 1394 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001757963.1 | 0 | 1 | 304 | 57 | 374 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | YP_002135388.1 | 6e-16 | 46 | 264 | 80 | 297 | glycoside hydrolase family 16 [Anaeromyxobacter sp. K] |
| RefSeq | YP_002493546.1 | 0.000000000000003 | 46 | 264 | 80 | 297 | glycoside hydrolase family 16 [Anaeromyxobacter dehalogenans 2CP-1] |
| RefSeq | YP_466157.1 | 6e-17 | 46 | 264 | 65 | 282 | hypothetical protein Adeh_2950 [Anaeromyxobacter dehalogenans 2CP-C] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FC451147 | 268 | 212 | 479 | 0 |
| FC372424 | 249 | 157 | 405 | 0 |
| BJ946270 | 194 | 1 | 194 | 0 |
| FC451146 | 189 | 314 | 502 | 0 |
| BJ160780 | 173 | 1 | 173 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Physcomitrella patens | Pp1s30_337V6.1 | Pp1s58_31V6.2 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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