| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s221_60V6.1 |
| Family | GT19 |
| Protein Properties | Length: 537 Molecular Weight: 58749.9 Isoelectric Point: 7.4578 |
| Chromosome | Chromosome/Scaffold: 221 Start: 559398 End: 564260 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT19 | 227 | 513 | 2.5e-30 |
| VGDLFVDAVGCSPSSISWSLSDKLQSRAQDRNVVPIVGLLPGSKDAKLAIGVPYFMAVADHLHQLLQGQVRFVLPLAPTVTVTELERFADAASNPLISRF HWSSGHFVGKQSVKVEKISKLRQEEPEEGSTWNSSELLKVEELGQLVTEGGVVIDIQQQFPPYSLYQGCSVCLTTVGTNTAELGTLGVPMLVVLPTYFLE TFRGATGGILGLLSAIPGQAGAAMAHFVNLFILKTAGFISWPNRWAGETIVPELIGEIDPQEVAALAAEYLQSPDRLQAMHERLLDL | |||
| Full Sequence |
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| Protein Sequence Length: 537 Download |
| MAGSMCPATV LSGPSCARVS SPSWNVLNRA SKCFIRVSKF APLFCGALKT RKRDQSTIFR 60 VSVKSSHIRA EVKNEPVDVV ILTNGPGEVA TWVKPVVARL RRTAEDHAMD MRISVLLAPC 120 PHASGKELQL LQSFDEIDRC QGPEEFYSLL LLGRTRSGWD WRRRGVCIFL GGDQFNTLIL 180 GWRLGYKTVV YAEDAARWPG FVDLYMLRSE ELVLEVPQWA RSRCLVVGDL FVDAVGCSPS 240 SISWSLSDKL QSRAQDRNVV PIVGLLPGSK DAKLAIGVPY FMAVADHLHQ LLQGQVRFVL 300 PLAPTVTVTE LERFADAASN PLISRFHWSS GHFVGKQSVK VEKISKLRQE EPEEGSTWNS 360 SELLKVEELG QLVTEGGVVI DIQQQFPPYS LYQGCSVCLT TVGTNTAELG TLGVPMLVVL 420 PTYFLETFRG ATGGILGLLS AIPGQAGAAM AHFVNLFILK TAGFISWPNR WAGETIVPEL 480 IGEIDPQEVA ALAAEYLQSP DRLQAMHERL LDLQMPRSVS KGGAAHSIAV AVQQLL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02684 | LpxB | 0.002 | 380 | 529 | 157 | + Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. | ||
| PRK00025 | lpxB | 1.0e-6 | 403 | 536 | 135 | + lipid-A-disaccharide synthase; Reviewed | ||
| COG0763 | LpxB | 7.0e-8 | 395 | 536 | 143 | + Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001777440.1 | 0 | 31 | 526 | 606 | 1077 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | YP_002378048.1 | 0 | 75 | 535 | 2 | 414 | putative lipid-A-disaccharide synthase [Cyanothece sp. PCC 7424] |
| RefSeq | YP_322216.1 | 0 | 75 | 534 | 2 | 414 | hypothetical protein Ava_1699 [Anabaena variabilis ATCC 29413] |
| RefSeq | ZP_00514153.1 | 0 | 75 | 536 | 2 | 412 | conserved hypothetical protein [Crocosphaera watsonii WH 8501] |
| RefSeq | ZP_01730195.1 | 0 | 75 | 536 | 2 | 416 | hypothetical protein CY0110_28939 [Cyanothece sp. CCY0110] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BY978908 | 222 | 66 | 287 | 0 |
| BJ960251 | 161 | 377 | 537 | 0 |
| BJ605030 | 158 | 380 | 537 | 0 |
| BJ198716 | 142 | 1 | 142 | 0 |
| HO417818 | 304 | 220 | 520 | 0 |
| Orthologous Group | |||||
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| Species | ID | ||||
| Physcomitrella patens | Pp1s221_60V6.2 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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