| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s221_60V6.2 |
| Family | GT19 |
| Protein Properties | Length: 550 Molecular Weight: 60019.3 Isoelectric Point: 7.4578 |
| Chromosome | Chromosome/Scaffold: 221 Start: 559398 End: 564260 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT19 | 240 | 526 | 2.6e-30 |
| VGDLFVDAVGCSPSSISWSLSDKLQSRAQDRNVVPIVGLLPGSKDAKLAIGVPYFMAVADHLHQLLQGQVRFVLPLAPTVTVTELERFADAASNPLISRF HWSSGHFVGKQSVKVEKISKLRQEEPEEGSTWNSSELLKVEELGQLVTEGGVVIDIQQQFPPYSLYQGCSVCLTTVGTNTAELGTLGVPMLVVLPTYFLE TFRGATGGILGLLSAIPGQAGAAMAHFVNLFILKTAGFISWPNRWAGETIVPELIGEIDPQEVAALAAEYLQSPDRLQAMHERLLDL | |||
| Full Sequence |
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| Protein Sequence Length: 550 Download |
| MAGSMCPATV LSGPSCARVS SPSWNVLNRA SKCFIRVSKF APLFCGALKT RKRGSPVNFT 60 VIPGISDQST IFRVSVKSSH IRAEVKNEPV DVVILTNGPG EVATWVKPVV ARLRRTAEDH 120 AMDMRISVLL APCPHASGKE LQLLQSFDEI DRCQGPEEFY SLLLLGRTRS GWDWRRRGVC 180 IFLGGDQFNT LILGWRLGYK TVVYAEDAAR WPGFVDLYML RSEELVLEVP QWARSRCLVV 240 GDLFVDAVGC SPSSISWSLS DKLQSRAQDR NVVPIVGLLP GSKDAKLAIG VPYFMAVADH 300 LHQLLQGQVR FVLPLAPTVT VTELERFADA ASNPLISRFH WSSGHFVGKQ SVKVEKISKL 360 RQEEPEEGST WNSSELLKVE ELGQLVTEGG VVIDIQQQFP PYSLYQGCSV CLTTVGTNTA 420 ELGTLGVPML VVLPTYFLET FRGATGGILG LLSAIPGQAG AAMAHFVNLF ILKTAGFISW 480 PNRWAGETIV PELIGEIDPQ EVAALAAEYL QSPDRLQAMH ERLLDLQMPR SVSKGGAAHS 540 IAVAVQQLL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02684 | LpxB | 0.002 | 393 | 542 | 157 | + Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. | ||
| PRK00025 | lpxB | 1.0e-6 | 416 | 549 | 135 | + lipid-A-disaccharide synthase; Reviewed | ||
| COG0763 | LpxB | 7.0e-8 | 408 | 549 | 143 | + Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001777440.1 | 0 | 49 | 539 | 600 | 1077 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | YP_002378048.1 | 0 | 88 | 548 | 2 | 414 | putative lipid-A-disaccharide synthase [Cyanothece sp. PCC 7424] |
| RefSeq | YP_322216.1 | 0 | 88 | 547 | 2 | 414 | hypothetical protein Ava_1699 [Anabaena variabilis ATCC 29413] |
| RefSeq | ZP_00514153.1 | 0 | 88 | 549 | 2 | 412 | conserved hypothetical protein [Crocosphaera watsonii WH 8501] |
| RefSeq | ZP_01730195.1 | 0 | 88 | 549 | 2 | 416 | hypothetical protein CY0110_28939 [Cyanothece sp. CCY0110] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BY978908 | 222 | 79 | 300 | 0 |
| BJ960251 | 161 | 390 | 550 | 0 |
| BJ605030 | 158 | 393 | 550 | 0 |
| BJ198716 | 155 | 1 | 155 | 0 |
| HO417818 | 304 | 233 | 533 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Physcomitrella patens | Pp1s221_60V6.1 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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