| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s222_49V6.1 |
| Family | AA7 |
| Protein Properties | Length: 635 Molecular Weight: 70358.6 Isoelectric Point: 7.0581 |
| Chromosome | Chromosome/Scaffold: 222 Start: 289313 End: 293540 |
| Description | cytokinin oxidase/dehydrogenase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 159 | 349 | 1.5e-26 |
| PGAILYPKSVRDIQVVIRAVHSATSSELTLAARGRGHSVHGQAQALNGVVVEMSSMKGIKVAPHGEPGFQQPFVDAAGGELWIDVLRETLKEGLAPRSWT DYLYLSIGGTLSNAGVGGQTFLFGPEISNVLQLDVVTGTGHAVTCSPTKHSDLFHGVLGGLGQFGVITSARIVLEPAHEKVRWIRAMYTDF | |||
| Full Sequence |
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| Protein Sequence Length: 635 Download |
| MVTMFLFPNS ATSTHELLQV HDSKRLLTGL EPFTTSTRIE LGRREVHSPE TTRERNPVKL 60 GSCSVIQGIM RFVCILGIWT KLAWGSASWT LVVCLLLARG RKGQHSNEYT QSSSSYSDSS 120 NLSYRDRVLL SSLHLDGALT FSNTSSAASD FGLIHFSLPG AILYPKSVRD IQVVIRAVHS 180 ATSSELTLAA RGRGHSVHGQ AQALNGVVVE MSSMKGIKVA PHGEPGFQQP FVDAAGGELW 240 IDVLRETLKE GLAPRSWTDY LYLSIGGTLS NAGVGGQTFL FGPEISNVLQ LDVVTGTGHA 300 VTCSPTKHSD LFHGVLGGLG QFGVITSARI VLEPAHEKVR WIRAMYTDFA TFTRDQEMLI 360 SQPPQHTFDY IEGFVVLKNE DPNNGWNSVP FDAKKIDPSM IPEEGGSVLY YIELAKKFSG 420 DNILGLDQIV ERMMAPLSFI PTLVFTTDVP YAKFLNRLHD VELNLASQGL WDVPHPWLNL 480 FVPRSSIASF DDLIFKHMIK SDFSGPILIY PIKGERWDSR SSAVIPDESI FYLVAFLRIS 540 LPSSGPLLST LMAENDKIME ICHDAGMGCK MYLPEHNDIQ SWKTHFGKRW ETFARRKMKY 600 DPHFILAPGQ NIFRNSMRAL PHPDHPLMSA TPIA* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02805 | PLN02805 | 0.002 | 157 | 339 | 198 | + D-lactate dehydrogenase [cytochrome] | ||
| pfam01565 | FAD_binding_4 | 4.0e-23 | 159 | 304 | 148 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| COG0277 | GlcD | 1.0e-25 | 158 | 612 | 476 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam09265 | Cytokin-bind | 2.0e-118 | 338 | 613 | 280 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
| PLN02441 | PLN02441 | 0 | 129 | 620 | 495 | + cytokinin dehydrogenase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0009690 | cytokinin metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0019139 | cytokinin dehydrogenase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001776926.1 | 0 | 103 | 619 | 2 | 519 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001777489.1 | 0 | 127 | 613 | 1 | 490 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001777510.1 | 0 | 70 | 634 | 1 | 565 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001784400.1 | 0 | 130 | 613 | 1 | 478 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001786014.1 | 0 | 139 | 613 | 2 | 480 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2q4w_A | 0 | 132 | 617 | 33 | 524 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| PDB | 2exr_A | 0 | 132 | 617 | 33 | 524 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
| PDB | 3s1d_A | 0 | 130 | 613 | 20 | 515 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 3s1c_A | 0 | 130 | 613 | 20 | 515 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| PDB | 3dq0_A | 0 | 130 | 613 | 20 | 515 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cytokinins degradation | RXN-4621 | EC-1.5.99 | isopentenyladenine:FAD oxidoreductase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FC349116 | 258 | 247 | 504 | 0 |
| FC355455 | 265 | 355 | 619 | 0 |
| HO781924 | 486 | 133 | 613 | 0 |
| ES837714 | 286 | 252 | 537 | 0 |
| DY269838 | 332 | 159 | 479 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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