Basic Information | |
---|---|
Species | Physcomitrella patens |
Cazyme ID | Pp1s227_9V6.1 |
Family | CE8 |
Protein Properties | Length: 380 Molecular Weight: 41706.2 Isoelectric Point: 9.1963 |
Chromosome | Chromosome/Scaffold: 227 Start: 44626 End: 46670 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 85 | 371 | 0 |
MFVDISGSGDTRTVQEAVNAVRRYNKKRVTIYINAGTYIEKVHVPHNKPYITFEGAGLHHTIISWNDNQTLTNGSTIHTASVTVDGNYFIGRNLSFRNTA PIPLPGVKDGGQAVALLVKGDKCAFYGCGIYGYQDTLYDYSGRHLFRECHIEGAVDFIFGNARSLYERCTIHSIASKAGSITAQSRASKFNVTGFGFVNC SIVGTGQILLGRAWRPYARVVFASSFMDNIIDSAGWNDWGNSSADSSVYFGEFNNSGPGANMSGRVPYARSLSFEEALGCTQIDWID |
Full Sequence |
---|
Protein Sequence Length: 380 Download |
MKFLSTRTII LSVGIGVIVG IFGLLVTEKK LLNPLQFGKQ KLQSGDITTF STRLVFGANS 60 TSFSARIYSY DIVKLKRKLE SKQNMFVDIS GSGDTRTVQE AVNAVRRYNK KRVTIYINAG 120 TYIEKVHVPH NKPYITFEGA GLHHTIISWN DNQTLTNGST IHTASVTVDG NYFIGRNLSF 180 RNTAPIPLPG VKDGGQAVAL LVKGDKCAFY GCGIYGYQDT LYDYSGRHLF RECHIEGAVD 240 FIFGNARSLY ERCTIHSIAS KAGSITAQSR ASKFNVTGFG FVNCSIVGTG QILLGRAWRP 300 YARVVFASSF MDNIIDSAGW NDWGNSSADS SVYFGEFNNS GPGANMSGRV PYARSLSFEE 360 ALGCTQIDWI DGSEWVDDR* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 7.0e-98 | 85 | 376 | 292 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-98 | 87 | 376 | 297 | + pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-103 | 87 | 376 | 296 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 1.0e-110 | 87 | 376 | 298 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-117 | 90 | 376 | 293 | + pectinesterase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27989.1 | 0 | 90 | 376 | 21 | 311 | unnamed protein product [Vitis vinifera] |
GenBank | EEC83093.1 | 0 | 87 | 376 | 89 | 384 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
GenBank | EEE68230.1 | 0 | 87 | 376 | 214 | 509 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
RefSeq | XP_001777828.1 | 0 | 85 | 379 | 1 | 295 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002445213.1 | 0 | 87 | 376 | 94 | 389 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 84 | 376 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 84 | 376 | 4 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 4e-19 | 81 | 360 | 29 | 348 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-16 | 115 | 366 | 37 | 330 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-16 | 115 | 366 | 37 | 330 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |