| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s22_124V6.1 |
| Family | GT5 |
| Protein Properties | Length: 1028 Molecular Weight: 115679 Isoelectric Point: 5.6502 |
| Chromosome | Chromosome/Scaffold: 22 Start: 773511 End: 782116 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 530 | 1016 | 0 |
| HIIHIAAEMAPVAKVGGLGDVLTGLSRALQRKGHLVEVILPKYDCMDYSRITNLKELDLELHSVFDGHMHKNKVWSGIVEGLPVYFIEPLHPAKLFWRGK FYSEPDDFRRFTYFCRAAMEFLLQSGKRPDIIHSHDWQTAVVAPLYWEVYVPLGLDSARLAFTCHNFEYQGTENSGAIAACGLSVRDLMRPDRMQDNYFH SRINLLKGGIVFSNVVTTVSPTYAQEVLQPEDGKGLHGTLANHSKKFFGVLNGIDVEVWNPATDTLIDFQYSADDIDGKYINKQKLRERLGLGNQGGDER RPLVGCVTRLVPQKGVHLIKHAIYHTLEKGGQFILLGSSPIPQIQHEFEKISRQFKEHPQVRLVLKYDEALSHEIFAAADIFLIPSIFEPCGLTQMISMR YGTIPVVRKTGGLADSVFDVDDENISEEKKNGFVFDDANEGSLDWGLDRALDYYCRRPEWWEDLVKKAMLIDFSWETSADQYVDLYK | |||
| Full Sequence |
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| Protein Sequence Length: 1028 Download |
| MSIAASVSVG NATATVRKSP HNFSSIGQLK YGCRVSLEDS AKVSSAKKSY SRRMRDHRRP 60 LEVSNRTGED GRDFPGTVQD AQRLSAAAEE LYRLGDGDRF RSQGSVTLNS ALNAKGHEKG 120 GHGSFSEVSA KRVPDSNISG EISRVSVDDI MRVVKETESD IITLMQLRER VTEELKSAHY 180 EKEQLQLQVH DLAAHPAGSD PKLKYAVGGD ERVRLLEAEV EKLQRRLSET VVDSQAFAKL 240 KEENRVLQES LNVYKQSGGQ SLLEAKYQSS LDEINTLRVK LAGAHAEIKK LSRGPGREGA 300 RLQENIIELD NNIADMEKQL AEANDTNAEL EALKDENLAL QEEAAALRVQ LAALQKDSSP 360 SSAEGDSQDR TLQRQVVSLK SLLARTVAEK NALLNVRSEN IQLHEQVARL EERLRESDAE 420 IQAQLRIYTA EVEDFQASLD GLKSENEFTV NQIPVDEMSW EIWSELLLRI DTLMLDDFLS 480 QEDAKELQLM AWRREKRLVD VYVTLADKAD EDLTSGFMEF IQPKKRPGIH IIHIAAEMAP 540 VAKVGGLGDV LTGLSRALQR KGHLVEVILP KYDCMDYSRI TNLKELDLEL HSVFDGHMHK 600 NKVWSGIVEG LPVYFIEPLH PAKLFWRGKF YSEPDDFRRF TYFCRAAMEF LLQSGKRPDI 660 IHSHDWQTAV VAPLYWEVYV PLGLDSARLA FTCHNFEYQG TENSGAIAAC GLSVRDLMRP 720 DRMQDNYFHS RINLLKGGIV FSNVVTTVSP TYAQEVLQPE DGKGLHGTLA NHSKKFFGVL 780 NGIDVEVWNP ATDTLIDFQY SADDIDGKYI NKQKLRERLG LGNQGGDERR PLVGCVTRLV 840 PQKGVHLIKH AIYHTLEKGG QFILLGSSPI PQIQHEFEKI SRQFKEHPQV RLVLKYDEAL 900 SHEIFAAADI FLIPSIFEPC GLTQMISMRY GTIPVVRKTG GLADSVFDVD DENISEEKKN 960 GFVFDDANEG SLDWGLDRAL DYYCRRPEWW EDLVKKAMLI DFSWETSADQ YVDLYKHLLK 1020 NAQAAKQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 4.0e-153 | 525 | 1015 | 498 | + synthase/transferase | ||
| PLN02939 | PLN02939 | 0 | 141 | 1027 | 896 | + transferase, transferring glycosyl groups | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 530 | 1016 | 492 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 0 | 529 | 1018 | 494 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 0 | 530 | 1021 | 492 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB40375.1 | 0 | 421 | 1027 | 269 | 873 | starch synthase, isoform V [Vigna unguiculata] |
| RefSeq | NP_193558.3 | 0 | 302 | 1024 | 316 | 1035 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_001751723.1 | 0 | 203 | 1024 | 44 | 835 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001756311.1 | 0 | 421 | 1027 | 26 | 670 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001759580.1 | 0 | 378 | 1020 | 4 | 644 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 529 | 1018 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 529 | 1018 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 529 | 1018 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 529 | 1018 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 529 | 1018 | 1 | 476 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| GO851132 | 335 | 604 | 938 | 0 |
| CB893818 | 281 | 528 | 808 | 0 |
| CF828776 | 288 | 654 | 941 | 0 |
| FE428048 | 278 | 519 | 796 | 0 |
| GW865616 | 300 | 635 | 934 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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