| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s233_4V6.1 |
| Family | GH14 |
| Protein Properties | Length: 606 Molecular Weight: 67783.2 Isoelectric Point: 6.8873 |
| Chromosome | Chromosome/Scaffold: 233 Start: 32652 End: 35475 |
| Description | beta-amylase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 140 | 563 | 0 |
| FVMLPLDSVNINNTLKRRRALNASLLALKSAGVEGVMMDVWWGIVEKEGPRNYNWSAYRELIDMVRKHGLKVQAVMSFHQCGGNVGDSCNIPLPPWVLEE VQKNPDLAYTDKAGKRNAEYISLGADNVPALKGRTPVQCYADFMRSFRDNFKDLLGDVIIEIQCGMGPAGELRYPSYPESEGRWRFPGIGEFQCYDKYML ASLKANAQALGKPAWGHGGPCDAGNYNQWPDETGFFHRDGSWCSEYGQFFMEWYSEMILAHGERLLASASGIFKGTGAVISGKVAGIHWHYGTRSHAAEL TAGYYNTRTRDGYATIAQMFAKYGVTLNFTCIEMRDYEQPSQASCSPEGLVRQVALATRRAGIPMAGENALPRFDSSAHEQIVRKSRLRMNEHGDCHEEY EPMAAFTFLRMCESLFHSENWKLF | |||
| Full Sequence |
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| Protein Sequence Length: 606 Download |
| MCRSATLANR FVCGNVLTDR LQSEASSSGR VELARFSARR AVPGVSCSQR NQSDGHVAHT 60 SSGSVSSFGS LSSEEWWRKN TGSAGDSTGG LRATHHTQMD TMFPEHKSLL DWDNTADEWK 120 EHAFHETPTS RGVHGGVPVF VMLPLDSVNI NNTLKRRRAL NASLLALKSA GVEGVMMDVW 180 WGIVEKEGPR NYNWSAYREL IDMVRKHGLK VQAVMSFHQC GGNVGDSCNI PLPPWVLEEV 240 QKNPDLAYTD KAGKRNAEYI SLGADNVPAL KGRTPVQCYA DFMRSFRDNF KDLLGDVIIE 300 IQCGMGPAGE LRYPSYPESE GRWRFPGIGE FQCYDKYMLA SLKANAQALG KPAWGHGGPC 360 DAGNYNQWPD ETGFFHRDGS WCSEYGQFFM EWYSEMILAH GERLLASASG IFKGTGAVIS 420 GKVAGIHWHY GTRSHAAELT AGYYNTRTRD GYATIAQMFA KYGVTLNFTC IEMRDYEQPS 480 QASCSPEGLV RQVALATRRA GIPMAGENAL PRFDSSAHEQ IVRKSRLRMN EHGDCHEEYE 540 PMAAFTFLRM CESLFHSENW KLFVPFVRHM EEGRTFQPWE EEHHRTETHV HATRPLVQEA 600 ASLMY* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 6.0e-135 | 137 | 570 | 438 | + beta-amylase | ||
| pfam01373 | Glyco_hydro_14 | 5.0e-141 | 140 | 566 | 438 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
| PLN02801 | PLN02801 | 4.0e-179 | 137 | 570 | 436 | + beta-amylase | ||
| PLN02803 | PLN02803 | 0 | 87 | 573 | 487 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 116 | 605 | 501 | + beta-amylase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001756520.1 | 0 | 124 | 605 | 1 | 482 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001768786.1 | 0 | 102 | 604 | 1 | 503 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001778149.1 | 0 | 99 | 605 | 1 | 507 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001782016.1 | 0 | 142 | 605 | 1 | 464 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002314522.1 | 0 | 136 | 601 | 6 | 469 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 137 | 597 | 12 | 468 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 1q6c_A | 0 | 137 | 597 | 12 | 468 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 137 | 597 | 12 | 468 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1uko_D | 0 | 137 | 597 | 12 | 468 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_C | 0 | 137 | 597 | 12 | 468 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO624546 | 409 | 171 | 579 | 0 |
| HO593646 | 409 | 171 | 579 | 0 |
| BU103692 | 440 | 134 | 573 | 0 |
| HO779314 | 412 | 197 | 606 | 0 |
| HO794833 | 399 | 175 | 573 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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