Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s234_74V6.1 |
Family | GT5 |
Protein Properties | Length: 696 Molecular Weight: 76787.1 Isoelectric Point: 6.6648 |
Chromosome | Chromosome/Scaffold: 234 Start: 494844 End: 499841 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 205 | 688 | 0 |
NIIIVAAECAPWSKTGGLGDVVGALPKALARRGHRVMVVAPRYSNYAEAWETGIRRIYNVSGQDMEVGYFHSFLDGVDFVFIDNPIFHAYANNIYGGSRE DVLNRMILLSKAAVEIPWHVPCGGVCYGDGNLVFIANDWHTALVPVYLQAYYRDNGYMEYTRSVLVIHNMAHQGRGPLKDYGKLGLPDHYINKFRLYDPQ GGEHNNVFMAGLITAHRIVTVSHGYAWEVQTQEGGWGLDGVIRDHNWKLRGVVNGIDDKEWNPELDVHLQSDGYTNYNSATLDTGKAACKAALQRELGLP ERSDVPLLGFIGRLDSQKGIDILAQAMPWLMSQDIQLVMLGTGRKDYEDMLQHFESAHRDKVRGWVGFSVKTAHRITAGVDILLMPSRFEPCGLNQLYAM RYGTVPVVHAVGGLKDTVQSFNPFNETGLGWTFETLNADAFIHALGNAMWTYHDFKTSWRGIQQRGMSQDLSWDHAAQQYEEVL |
Full Sequence |
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Protein Sequence Length: 696 Download |
MRDRNRGSVG RCDGGARKGR RQRSVVRGAE VEEQGPSGVG EKDRSVILED SKKFLAMQKD 60 LFDQIEERQS FFSSSSDQSS ASDGTEQSNV PPASTSQPTE EAADASTSTQ TAPSSSGRSL 120 AAAWPSPPPS KRSGRSGRAV SQAYTPPMTN RPVAPQKEST DFHSDHGRVG NSVNVSERPQ 180 PAKTEAAGPL ELEKPPPLAG PNVMNIIIVA AECAPWSKTG GLGDVVGALP KALARRGHRV 240 MVVAPRYSNY AEAWETGIRR IYNVSGQDME VGYFHSFLDG VDFVFIDNPI FHAYANNIYG 300 GSREDVLNRM ILLSKAAVEI PWHVPCGGVC YGDGNLVFIA NDWHTALVPV YLQAYYRDNG 360 YMEYTRSVLV IHNMAHQGRG PLKDYGKLGL PDHYINKFRL YDPQGGEHNN VFMAGLITAH 420 RIVTVSHGYA WEVQTQEGGW GLDGVIRDHN WKLRGVVNGI DDKEWNPELD VHLQSDGYTN 480 YNSATLDTGK AACKAALQRE LGLPERSDVP LLGFIGRLDS QKGIDILAQA MPWLMSQDIQ 540 LVMLGTGRKD YEDMLQHFES AHRDKVRGWV GFSVKTAHRI TAGVDILLMP SRFEPCGLNQ 600 LYAMRYGTVP VVHAVGGLKD TVQSFNPFNE TGLGWTFETL NADAFIHALG NAMWTYHDFK 660 TSWRGIQQRG MSQDLSWDHA AQQYEEVLLA AKYTW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 2.0e-93 | 204 | 692 | 509 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 8.0e-140 | 204 | 686 | 495 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 2.0e-176 | 204 | 687 | 494 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 204 | 691 | 494 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 205 | 688 | 493 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV25894.1 | 0 | 33 | 695 | 60 | 751 | starch synthase isoform II [Manihot esculenta] |
GenBank | ACN39858.1 | 0 | 32 | 695 | 71 | 760 | unknown [Picea sitchensis] |
RefSeq | XP_001754221.1 | 0 | 204 | 695 | 1 | 492 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001757452.1 | 0 | 204 | 695 | 1 | 492 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778218.1 | 0 | 204 | 695 | 1 | 492 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 204 | 689 | 10 | 509 | A Chain A, Crystal Structure Of The Reconstituted Cota |
PDB | 3vue_A | 0 | 204 | 689 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 1rzv_B | 0 | 204 | 684 | 1 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 0 | 204 | 684 | 1 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzu_B | 0 | 204 | 684 | 1 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO445868 | 438 | 259 | 696 | 0 |
HO777841 | 307 | 390 | 696 | 0 |
HO777841 | 237 | 149 | 385 | 0 |
HO390058 | 459 | 239 | 696 | 0 |
HO781048 | 395 | 302 | 696 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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