Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s236_72V6.2 |
Family | CE8 |
Protein Properties | Length: 319 Molecular Weight: 34637 Isoelectric Point: 7.2962 |
Chromosome | Chromosome/Scaffold: 236 Start: 581463 End: 583232 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 75 | 312 | 0 |
VGMEGSGAQYQNVQDAIDSIPESNEERCVIRIGEGSFWGKNIVTAKQRYITFEGAGMFKTFLKYNDYAEKAGSTSKSASTAVMSDYFVAKDLTFENTHPP PPGGAVGQQAVAFRIEGDFAQFYRVGFLGAQDTLYDKKGRHYFKDCYIKGSIDFVFGNGQSYYEYCHLDSIANPGSGSLTAQKKMTKDENSGFSFVNCKV TGNGPIYLGRAWGPYSRVVLLLTDISAPIIPAGWYNWG |
Full Sequence |
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Protein Sequence Length: 319 Download |
MAVSRKFCMV VALMAGLVLT ASAMSESEAD FASFVKRQQL RMDAKKTEGM GIAGTPPDDG 60 SSSPSPSTPT CIRTVGMEGS GAQYQNVQDA IDSIPESNEE RCVIRIGEGS FWGKNIVTAK 120 QRYITFEGAG MFKTFLKYND YAEKAGSTSK SASTAVMSDY FVAKDLTFEN THPPPPGGAV 180 GQQAVAFRIE GDFAQFYRVG FLGAQDTLYD KKGRHYFKDC YIKGSIDFVF GNGQSYYEYC 240 HLDSIANPGS GSLTAQKKMT KDENSGFSFV NCKVTGNGPI YLGRAWGPYS RVVLLLTDIS 300 APIIPAGWYN WGDSSREK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 6.0e-62 | 74 | 318 | 246 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 1.0e-65 | 74 | 315 | 248 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-66 | 74 | 318 | 245 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 1.0e-69 | 84 | 318 | 242 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-86 | 84 | 318 | 241 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27989.1 | 0 | 69 | 317 | 11 | 264 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001777108.1 | 0 | 74 | 318 | 1 | 245 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778320.1 | 0 | 50 | 318 | 1 | 269 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001782802.1 | 0 | 75 | 318 | 2 | 245 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785149.1 | 0 | 84 | 318 | 3 | 231 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9.99967e-42 | 75 | 311 | 11 | 252 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-30 | 74 | 311 | 6 | 248 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000000000007 | 81 | 288 | 41 | 271 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000000003 | 81 | 288 | 15 | 247 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000000003 | 81 | 288 | 15 | 247 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |