y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s236_80V6.1 |
Family | CE8 |
Protein Properties | Length: 372 Molecular Weight: 40775.6 Isoelectric Point: 9.9507 |
Chromosome | Chromosome/Scaffold: 236 Start: 653412 End: 655028 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 83 | 363 | 0 |
VNKQKGPYRTVQQAVNAVPKGNTKRIVIYIPDGVYKEKILVPKTKPFITFQCQSRKATLVWGDTAAKAGGTAKSASTAIESKGFIAYDCTFANSAPAPPG GAVGKQAVALRIQGDQGAFYRCAFLGAQDTLYDKEGRHYFRDCYIRGSIDFVFGDGQSIYKKCLIESIAKGTSGSITAQKRESFSRTGFVFDQCTIRGSG SIYLGRAWGTHSRVVFCRCNMANIIRPIGWQDWDDKRRQKTVFYAEYACTGPGANRKGRAPWSKVLSAAQAKPFLDYGFID |
Full Sequence |
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Protein Sequence Length: 372 Download |
MGSMSRCIFS ALVILVAVCS VAKPASAAEF RTLSGQGSDS DSSWDKWLES VRVEYEKKQQ 60 QSVLGVDETM TTQAAPKGKT IYVNKQKGPY RTVQQAVNAV PKGNTKRIVI YIPDGVYKEK 120 ILVPKTKPFI TFQCQSRKAT LVWGDTAAKA GGTAKSASTA IESKGFIAYD CTFANSAPAP 180 PGGAVGKQAV ALRIQGDQGA FYRCAFLGAQ DTLYDKEGRH YFRDCYIRGS IDFVFGDGQS 240 IYKKCLIESI AKGTSGSITA QKRESFSRTG FVFDQCTIRG SGSIYLGRAW GTHSRVVFCR 300 CNMANIIRPI GWQDWDDKRR QKTVFYAEYA CTGPGANRKG RAPWSKVLSA AQAKPFLDYG 360 FIDAKQWLPY V* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-90 | 87 | 368 | 284 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 7.0e-101 | 79 | 368 | 301 | + pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-104 | 70 | 368 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-104 | 90 | 368 | 288 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-120 | 50 | 369 | 337 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001766064.1 | 0 | 74 | 368 | 6 | 290 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774315.1 | 0 | 87 | 368 | 4 | 286 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778325.1 | 0 | 1 | 371 | 1 | 371 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785149.1 | 0 | 88 | 368 | 1 | 277 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785334.1 | 0 | 67 | 368 | 3 | 303 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 88 | 368 | 17 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5.00264e-43 | 88 | 368 | 13 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-22 | 71 | 356 | 25 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 5e-19 | 90 | 336 | 18 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-19 | 90 | 336 | 18 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |