y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s23_141V6.1 |
Family | CE8 |
Protein Properties | Length: 413 Molecular Weight: 45736.6 Isoelectric Point: 8.0533 |
Chromosome | Chromosome/Scaffold: 23 Start: 1003158 End: 1005867 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 107 | 397 | 0 |
VVVSQDGKGDFKTINEALDSIPLKSTHRTIIHIRAGVYKEKIVINETKHYITFLGDGMNKTVITWNDTAGDFDDQDVLLKTYRSATVGISSEWFIAKGVT FVNTAPSPPAGAILRQAVALRVTGDRAAFYNCSFYGYQDTLYDHRGRHYFENCYIQGSIDFIFGNGRSLYRSCKLHVVADTFGSLTAQKRNETKMHTGFS FVDCHVDGTGIIYLGRAWGNFSRTVYSYTYFSDIIYGPGWSDFGFPQRQQQVLFGQYHCYGPGASSPERVPWAKYLSPEEVKPFLSVGFIN |
Full Sequence |
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Protein Sequence Length: 413 Download |
MGSALGMRCA GLFAFAALAI VGFACADTSE PSQGEFTTWL KYMSDTSDND AVDDVAPVAE 60 ADTVTGTWTG GDLYNLDKDH GDEAKKPKVN RDSIGVLPKP TGKPKKVVVS QDGKGDFKTI 120 NEALDSIPLK STHRTIIHIR AGVYKEKIVI NETKHYITFL GDGMNKTVIT WNDTAGDFDD 180 QDVLLKTYRS ATVGISSEWF IAKGVTFVNT APSPPAGAIL RQAVALRVTG DRAAFYNCSF 240 YGYQDTLYDH RGRHYFENCY IQGSIDFIFG NGRSLYRSCK LHVVADTFGS LTAQKRNETK 300 MHTGFSFVDC HVDGTGIIYL GRAWGNFSRT VYSYTYFSDI IYGPGWSDFG FPQRQQQVLF 360 GQYHCYGPGA SSPERVPWAK YLSPEEVKPF LSVGFINGKK WLPHYIKKPK FT* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 5.0e-101 | 112 | 406 | 303 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 3.0e-105 | 110 | 402 | 294 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 3.0e-113 | 111 | 402 | 294 | + pectinesterase | ||
PLN02665 | PLN02665 | 8.0e-121 | 110 | 411 | 304 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 3.0e-139 | 113 | 404 | 292 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001756557.1 | 0 | 105 | 402 | 1 | 298 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001762576.1 | 0 | 97 | 409 | 5 | 317 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001764345.1 | 0 | 97 | 410 | 5 | 318 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769817.1 | 0 | 108 | 402 | 55 | 350 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002531506.1 | 0 | 108 | 404 | 70 | 366 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 106 | 402 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 108 | 402 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 7e-23 | 93 | 390 | 19 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 1e-21 | 110 | 281 | 12 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 1e-21 | 110 | 281 | 12 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |