Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s23_141V6.2 |
Family | CE8 |
Protein Properties | Length: 291 Molecular Weight: 31845.9 Isoelectric Point: 7.1477 |
Chromosome | Chromosome/Scaffold: 23 Start: 1003158 End: 1005867 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 107 | 276 | 0 |
VVVSQDGKGDFKTINEALDSIPLKSTHRTIIHIRAGVYKEKIVINETKHYITFLGDGMNKTVITWNDTAGDFDDQDVLLKTYRSATVGISSEWFIAKGVT FVNTAPSPPAGAILRQAVALRVTGDRAAFYNCSFYGYQDTLYDHRGRHYFENCYIQGSIDFIFGNGRSLY |
Full Sequence |
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Protein Sequence Length: 291 Download |
MGSALGMRCA GLFAFAALAI VGFACADTSE PSQGEFTTWL KYMSDTSDND AVDDVAPVAE 60 ADTVTGTWTG GDLYNLDKDH GDEAKKPKVN RDSIGVLPKP TGKPKKVVVS QDGKGDFKTI 120 NEALDSIPLK STHRTIIHIR AGVYKEKIVI NETKHYITFL GDGMNKTVIT WNDTAGDFDD 180 QDVLLKTYRS ATVGISSEWF IAKGVTFVNT APSPPAGAIL RQAVALRVTG DRAAFYNCSF 240 YGYQDTLYDH RGRHYFENCY IQGSIDFIFG NGRSLYRVKT KTVAHCRYTC * 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 3.0e-55 | 112 | 276 | 165 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-58 | 110 | 277 | 168 | + probable pectinesterase | ||
pfam01095 | Pectinesterase | 1.0e-64 | 110 | 272 | 163 | + Pectinesterase. | ||
PLN02665 | PLN02665 | 5.0e-67 | 110 | 276 | 167 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-74 | 113 | 276 | 164 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79461.1 | 0 | 107 | 277 | 84 | 253 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_001756557.1 | 0 | 105 | 277 | 1 | 173 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001762576.1 | 0 | 97 | 277 | 5 | 185 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001764345.1 | 0 | 97 | 277 | 5 | 185 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769817.1 | 0 | 108 | 277 | 55 | 224 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-38 | 107 | 271 | 9 | 162 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-29 | 108 | 285 | 6 | 171 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 3e-20 | 110 | 276 | 12 | 185 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-20 | 110 | 276 | 12 | 185 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 3e-20 | 110 | 276 | 12 | 185 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |