Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s23_181V6.1 |
Family | GH5 |
Protein Properties | Length: 358 Molecular Weight: 40222.2 Isoelectric Point: 4.6072 |
Chromosome | Chromosome/Scaffold: 23 Start: 1412695 End: 1414889 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 13 | 313 | 1.4e-30 |
NIFKHGAALGMTVCRSWAFNDAAYDALQETVGVYSEQAFKALDFVVMEAGRYGVRLLLTLVNNLPDYGGKTCYVQWARDAGIVLDGDTDDHFFSHPILRN YYKAHVKTVLTRVNSFTNVEYRNDPTIFGWELINEPRCAQESSSGAFQAWIEEMAAYVKSLDSKHLLTIGLEGFYKKSGKGTSTVNPHYMPGSGTDFIEN HEVDGIDFATVHAYPDLWMPWEDHSEKQKFFDAWVDAHIKDADEILQMPVLFSEFGLLNSQERLAMYTSMYDRIYESAKYRGAGGGALAWQLLDEEMANV W |
Full Sequence |
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Protein Sequence Length: 358 Download |
MAVEESTRSR VTNIFKHGAA LGMTVCRSWA FNDAAYDALQ ETVGVYSEQA FKALDFVVME 60 AGRYGVRLLL TLVNNLPDYG GKTCYVQWAR DAGIVLDGDT DDHFFSHPIL RNYYKAHVKT 120 VLTRVNSFTN VEYRNDPTIF GWELINEPRC AQESSSGAFQ AWIEEMAAYV KSLDSKHLLT 180 IGLEGFYKKS GKGTSTVNPH YMPGSGTDFI ENHEVDGIDF ATVHAYPDLW MPWEDHSEKQ 240 KFFDAWVDAH IKDADEILQM PVLFSEFGLL NSQERLAMYT SMYDRIYESA KYRGAGGGAL 300 AWQLLDEEMA NVWDDGFAIF PGQDLPMIHL IKLQSCRSKL LPSSSDECLD GDQSSSL* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.007 | 132 | 213 | 91 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
COG3934 | COG3934 | 3.0e-20 | 48 | 279 | 234 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI33116.1 | 0 | 2 | 337 | 78 | 419 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001756671.1 | 0 | 2 | 337 | 31 | 366 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001760262.1 | 0 | 1 | 341 | 36 | 380 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774665.1 | 0 | 2 | 354 | 76 | 428 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001784893.1 | 0 | 2 | 348 | 40 | 390 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 1 | 340 | 34 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 9.99995e-41 | 11 | 304 | 45 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 9.99995e-41 | 11 | 304 | 45 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 9.99995e-41 | 11 | 304 | 45 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 9.99995e-41 | 11 | 304 | 45 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DC943029 | 230 | 2 | 231 | 0 |
BY962519 | 130 | 114 | 243 | 0 |
BY962519 | 104 | 238 | 341 | 0 |
DT747977 | 267 | 1 | 266 | 0 |
DC957497 | 199 | 156 | 354 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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