| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s243_93V6.1 |
| Family | PL1 |
| Protein Properties | Length: 268 Molecular Weight: 29431.6 Isoelectric Point: 10.4243 |
| Chromosome | Chromosome/Scaffold: 243 Start: 721263 End: 722066 |
| Description | root hair specific 14 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 2 | 184 | 0 |
| ITSYKTIDGRGVTVRIAGGGGLTMQRVNNIIIHGIAIHDIKPTGPGRIMTSTSHVGKRNKFDGDAISIFSSKNIWIDHSYQARAADGLIDVIRGSSTVSI TNNYFTQHNKVMLFGAKKDDWMDRDMYVTVVYNVLGPKLQQMMPRVRFGNVHVLNDYRSRWGIYAIAGSEGPTILSQGNIFNA | |||
| Full Sequence |
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| Protein Sequence Length: 268 Download |
| MITSYKTIDG RGVTVRIAGG GGLTMQRVNN IIIHGIAIHD IKPTGPGRIM TSTSHVGKRN 60 KFDGDAISIF SSKNIWIDHS YQARAADGLI DVIRGSSTVS ITNNYFTQHN KVMLFGAKKD 120 DWMDRDMYVT VVYNVLGPKL QQMMPRVRFG NVHVLNDYRS RWGIYAIAGS EGPTILSQGN 180 IFNAYTGSKQ VTKRINDGGH SFGGPKNWNC KSEDDRFVSG AYCTSVPMKW SYQSYSKTAS 240 CAARPATMVS RMVRGAGPLS CRRGARC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-20 | 2 | 187 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-41 | 2 | 182 | 203 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-47 | 2 | 182 | 190 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001757625.1 | 0 | 1 | 267 | 90 | 357 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001767336.1 | 0 | 1 | 267 | 84 | 351 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001767377.1 | 0 | 1 | 267 | 98 | 365 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001778719.1 | 0 | 1 | 267 | 36 | 302 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001784519.1 | 0 | 1 | 267 | 105 | 372 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 257 | 86 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 257 | 86 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-16 | 20 | 185 | 82 | 249 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.0000000000004 | 2 | 158 | 130 | 300 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 2o1d_A | 0.000000001 | 2 | 158 | 125 | 294 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FC366211 | 192 | 78 | 268 | 0 |
| FC366210 | 185 | 85 | 268 | 0 |
| FC381032 | 153 | 117 | 268 | 0 |
| FC426280 | 149 | 121 | 268 | 0 |
| FC426281 | 167 | 1 | 166 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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