Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s26_8V6.1 |
Family | GT47 |
Protein Properties | Length: 650 Molecular Weight: 73266 Isoelectric Point: 4.6959 |
Chromosome | Chromosome/Scaffold: 26 Start: 100700 End: 103186 |
Description | root hair specific 8 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 248 | 592 | 0 |
SCEGKYVFVYDLPSEFNTELINRCDSLFPWFNLCDYFSDSGIGKPVNSMDNGTQIFVPADRWFSTHQYALELISHARIMKYKCRTEDPDLASLFYIPYYG GLDVIRWHFDPNATNENRDALGWKLVRWLENKPSWTRRGGIDHVLVLGKISWDFRRQDSGSWGSRLLEFPDLQKVMRVLIERNPWAKDDIGAPHPTYFHP SSASDIDAWLHHVKRQERTSLVTFVGKERRDDPANVRSALVEQCREAFSEADCRFVECNKNLCQQPAYVIKAFLMTHFCMQPVGDSPTRRSLFDSLIAGC IPVLFHPQTAYLQYPWHLPQNESSWSVYISEDEVRAGRINVIDVL |
Full Sequence |
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Protein Sequence Length: 650 Download |
MGDKYAVRVA PSKITLGAAK FKFLVPFYLL LLFVVWNSSS KAPFDGVNIG PVHDITKSKN 60 EAMGAHTILQ LKERINAQDG EVDKDTAQSG HDTDLIAEQY DNLMTATPTL ERNEDLYGAQ 120 SGIDRGEAGE VTPVMERPKD DENEEEQVFA RSGYVGNEEL VESTRDGADG YDQTTAESDE 180 SDRQGNSSPA LDSTEGDDQN ATVQEVKASI ITGDRMTEVN IAAMDIFNEI RANSLPYSIK 240 KTGETAQSCE GKYVFVYDLP SEFNTELINR CDSLFPWFNL CDYFSDSGIG KPVNSMDNGT 300 QIFVPADRWF STHQYALELI SHARIMKYKC RTEDPDLASL FYIPYYGGLD VIRWHFDPNA 360 TNENRDALGW KLVRWLENKP SWTRRGGIDH VLVLGKISWD FRRQDSGSWG SRLLEFPDLQ 420 KVMRVLIERN PWAKDDIGAP HPTYFHPSSA SDIDAWLHHV KRQERTSLVT FVGKERRDDP 480 ANVRSALVEQ CREAFSEADC RFVECNKNLC QQPAYVIKAF LMTHFCMQPV GDSPTRRSLF 540 DSLIAGCIPV LFHPQTAYLQ YPWHLPQNES SWSVYISEDE VRAGRINVID VLKKISTAER 600 SAMRETIINS IIPGLIYSIP GSDVSPYRDA FDITIDQLLY RSAQGSDLQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 6.0e-53 | 248 | 595 | 363 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001756054.1 | 0 | 248 | 647 | 1 | 400 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001757088.1 | 0 | 224 | 649 | 1 | 426 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001759310.1 | 0 | 248 | 639 | 1 | 392 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778302.1 | 0 | 223 | 639 | 3 | 410 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002509789.1 | 0 | 211 | 641 | 132 | 562 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |