Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s277_34V6.1 |
Family | AA2 |
Protein Properties | Length: 358 Molecular Weight: 38474.8 Isoelectric Point: 6.5138 |
Chromosome | Chromosome/Scaffold: 277 Start: 193926 End: 198075 |
Description | ascorbate peroxidase 6 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA2 | 134 | 349 | 0 |
KGKSAGVLRLSFHDAGTFDSSDNSGGMNGSLLFELERPESAGLQRPIKVLQKAKKEIELAFPVSWADLIAVAGAAAVLECDGPVIPVRLGRLDASGPDPE GKMPEETLTASELKRTFQSKGFSTQEMVALSGAHTIGNKGFGNPNLFDNSYFQILLQKPWKIGGPDDGMTSMIGLATDRALADDEECLEWVRVYAADQGR FFTDFSAVYTKLVNTG |
Full Sequence |
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Protein Sequence Length: 358 Download |
MALSCGSIST SSSLCCLSPI ACTPPASLAC HFPLRGGYLQ LESRHLASSL GFRNRKLSAN 60 CYGSGIRASL DNSSPGPDED KNVSRRQALL AVLAFTIPGS QVFQPQRFPQ ALAVEDEQMK 120 IELIQRELKK VLSKGKSAGV LRLSFHDAGT FDSSDNSGGM NGSLLFELER PESAGLQRPI 180 KVLQKAKKEI ELAFPVSWAD LIAVAGAAAV LECDGPVIPV RLGRLDASGP DPEGKMPEET 240 LTASELKRTF QSKGFSTQEM VALSGAHTIG NKGFGNPNLF DNSYFQILLQ KPWKIGGPDD 300 GMTSMIGLAT DRALADDEEC LEWVRVYAAD QGRFFTDFSA VYTKLVNTGA RWTPPQA* 360 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02608 | PLN02608 | 2.0e-29 | 111 | 355 | 260 | + L-ascorbate peroxidase |
cd00693 | secretory_peroxidase | 3.0e-30 | 122 | 349 | 287 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. |
pfam00141 | peroxidase | 3.0e-35 | 124 | 330 | 215 | + Peroxidase. |
cd00314 | plant_peroxidase_like | 1.0e-45 | 138 | 347 | 237 | + Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised of classic extracellular plant peroxidases, like horseradish peroxidase. |
cd00691 | ascorbate_peroxidase | 2.0e-58 | 113 | 352 | 257 | + Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water. |
Gene Ontology | |
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GO Term | Description |
GO:0004601 | peroxidase activity |
GO:0006979 | response to oxidative stress |
GO:0020037 | heme binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU18323.1 | 0 | 123 | 351 | 90 | 315 | unknown [Glycine max] |
RefSeq | XP_001780378.1 | 0 | 119 | 357 | 1 | 237 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002282677.1 | 0 | 12 | 352 | 9 | 327 | PREDICTED: similar to APX6 (ASCORBATE PEROXIDASE 6); L-ascorbate peroxidase [Vitis vinifera] |
RefSeq | XP_002309628.1 | 0 | 44 | 352 | 36 | 334 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515511.1 | 0 | 72 | 352 | 49 | 325 | L-ascorbate peroxidase 1, cytosolic, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1jci_A | 9e-37 | 140 | 349 | 46 | 273 | A Chain A, Stabilization Of The Engineered Cation-Binding Loop In Cytochrome C Peroxidase (Ccp) |
PDB | 1stq_A | 2e-36 | 140 | 349 | 46 | 273 | A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk |
PDB | 1sog_A | 1e-35 | 140 | 349 | 46 | 273 | A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk |
PDB | 1apx_D | 1e-35 | 116 | 349 | 10 | 245 | A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase |
PDB | 1apx_C | 1e-35 | 116 | 349 | 10 | 245 | A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
ascorbate glutathione cycle | RXN-3521 | - | L-ascorbate peroxidase |
L-ascorbate degradation III | RXN-12440 | EC-1.11.1.11 | L-ascorbate peroxidase |
L-ascorbate degradation V | RXN-12440 | EC-1.11.1.11 | L-ascorbate peroxidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BY946235 | 227 | 19 | 245 | 0 |
BY950534 | 215 | 19 | 233 | 0 |
DC949475 | 180 | 179 | 358 | 0 |
DC935671 | 184 | 19 | 202 | 0 |
BY992547 | 201 | 19 | 219 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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