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Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s27_365V6.1 |
Family | GT5 |
Protein Properties | Length: 766 Molecular Weight: 83858.6 Isoelectric Point: 6.8469 |
Chromosome | Chromosome/Scaffold: 27 Start: 2466147 End: 2471735 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 275 | 758 | 0 |
NVIVVAAECAPWSKTGGLGDVVGALPKALARRGHRVMVVAPRYSNYAEAWETGVRRIYNVGGQDMEVGYFHSFIDGVDFVFIDNPIFHAFANNIYGGSRE DVLTRMILLSKAAVETPWHVPCGGVCYGDGNLVFIANDWHTALVPVYLQAYYRDNGYMDFTRSVLVIHNMAHQGRGPLADYHRLGLPGHYIDKFRLFDPL GGEHNNIFMAGLITAHRIVTVSHGYAWEVQTPEGGWGLDGVLRDHNWKLRGVVNGIDDKEWNPELDVHLKSDGYTNYNLHSLDTGKAACKAALQRELGLP VRADVPLLGFIGRLDHQKGIDIIGQAMPWMMDQDIQLVMLGTGRKDYEDMLRHFEGSHRDKVRGWVGFSVTTSHRITAGVDILLMPSRFEPCGLNQLYAM RYGTVPVVHAVGGLKDTVQSFNPFNESGLGWTFETLHVDAFIHALGNAIWTYRDFKSSWKGIQQRGMSQDLSWDHAAQQYEEVL |
Full Sequence |
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Protein Sequence Length: 766 Download |
MERSVAMVMV ECAASLPSSS LALRAHVQTR IASVASTWAY FPVQETEGSR VRGLQCDDAM 60 RGVGGWRRGG GRRREVVRMA VGGEPGAAAG GSGGSASWKE RAVIFEESKK LLAMQKQLLD 120 QIEERQKLYS SPTVDTDQPS PSIVTESSSE PQAGTPEPSV ETSETFTSTP TIPSSSARPL 180 TAAWPSPPPS KRSVGSGRAV AQANSPAPSD RVETSPKTSP PPSPLAQSKR DFHSDHSRES 240 TGGNNSEVLQ QTRTDAAAPS AAEKPPPLAG PNVMNVIVVA AECAPWSKTG GLGDVVGALP 300 KALARRGHRV MVVAPRYSNY AEAWETGVRR IYNVGGQDME VGYFHSFIDG VDFVFIDNPI 360 FHAFANNIYG GSREDVLTRM ILLSKAAVET PWHVPCGGVC YGDGNLVFIA NDWHTALVPV 420 YLQAYYRDNG YMDFTRSVLV IHNMAHQGRG PLADYHRLGL PGHYIDKFRL FDPLGGEHNN 480 IFMAGLITAH RIVTVSHGYA WEVQTPEGGW GLDGVLRDHN WKLRGVVNGI DDKEWNPELD 540 VHLKSDGYTN YNLHSLDTGK AACKAALQRE LGLPVRADVP LLGFIGRLDH QKGIDIIGQA 600 MPWMMDQDIQ LVMLGTGRKD YEDMLRHFEG SHRDKVRGWV GFSVTTSHRI TAGVDILLMP 660 SRFEPCGLNQ LYAMRYGTVP VVHAVGGLKD TVQSFNPFNE SGLGWTFETL HVDAFIHALG 720 NAIWTYRDFK SSWKGIQQRG MSQDLSWDHA AQQYEEVLLA AKYTW* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 1.0e-87 | 274 | 762 | 510 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 1.0e-134 | 274 | 756 | 493 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 7.0e-172 | 274 | 757 | 494 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 274 | 761 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 275 | 758 | 493 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN39858.1 | 0 | 106 | 765 | 91 | 760 | unknown [Picea sitchensis] |
RefSeq | XP_001754221.1 | 0 | 274 | 765 | 1 | 492 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001757452.1 | 0 | 274 | 765 | 1 | 492 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778218.1 | 0 | 274 | 765 | 1 | 492 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002278470.1 | 0 | 105 | 765 | 96 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 274 | 759 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3vue_A | 0 | 274 | 759 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 274 | 757 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 274 | 757 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 274 | 757 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO445868 | 438 | 329 | 766 | 0 |
HO777841 | 307 | 460 | 766 | 0 |
HO777841 | 186 | 270 | 455 | 0 |
HO390058 | 459 | 309 | 766 | 0 |
HO781048 | 395 | 372 | 766 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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