Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s27_45V6.1 |
Family | GT5 |
Protein Properties | Length: 625 Molecular Weight: 68047.8 Isoelectric Point: 7.3749 |
Chromosome | Chromosome/Scaffold: 27 Start: 319671 End: 323581 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 98 | 595 | 0 |
NIVLVSTEVAPWSKTGGLGDVLGGLPPALAARGHRVMTVSPRYDQYKDAWDTNTPLEITIGNRTETVNFFHTHKRGVDRIFVDHPLFLAKVWGKTGSKIY GPTSGEDYDDNQFRFMLLAKAAIEATKILSLDSNEFFSGPYGENVVFVANDWHTALLPCYLKSAYKPSGQFQNAKVAFCVHNIAYQGRFAFGDFDKLGLS DEFRSSFDFIDGYEKPVKGRKINWMKAGFLESDLNMTVSPNYASELASGSDKGVELDSIVRKQGIVGICNGMDVQEWDPSSDKYLDTPYDINTVFEAKPE LKAALQAEVGLPIRPDVPLFGFIGRLEEQKGSDILAEAVKDFLKDDVQLIVLGTGKKHLEKQLEELDTLFPGKAIGVVKFNTPLAHLITAGADFLLVPSR FEPCGLIQLHAMRYGTIPVVASTGGLVDTVSEGITGFHVGKAFNVDCEVVHPDDVKLLAATVKRAVKSYGALELKRMIRNCMSQDLSWKGPACRWEET |
Full Sequence |
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Protein Sequence Length: 625 Download |
MAMAMASSQV CVARGALSAA QRLSSKDALR CDQPMNGMVS FHGLRASISI RRVGQTHAMP 60 LVEKARLRAV PSRRRPVSGV QCSATNNGSA VQKHSGMNIV LVSTEVAPWS KTGGLGDVLG 120 GLPPALAARG HRVMTVSPRY DQYKDAWDTN TPLEITIGNR TETVNFFHTH KRGVDRIFVD 180 HPLFLAKVWG KTGSKIYGPT SGEDYDDNQF RFMLLAKAAI EATKILSLDS NEFFSGPYGE 240 NVVFVANDWH TALLPCYLKS AYKPSGQFQN AKVAFCVHNI AYQGRFAFGD FDKLGLSDEF 300 RSSFDFIDGY EKPVKGRKIN WMKAGFLESD LNMTVSPNYA SELASGSDKG VELDSIVRKQ 360 GIVGICNGMD VQEWDPSSDK YLDTPYDINT VFEAKPELKA ALQAEVGLPI RPDVPLFGFI 420 GRLEEQKGSD ILAEAVKDFL KDDVQLIVLG TGKKHLEKQL EELDTLFPGK AIGVVKFNTP 480 LAHLITAGAD FLLVPSRFEP CGLIQLHAMR YGTIPVVAST GGLVDTVSEG ITGFHVGKAF 540 NVDCEVVHPD DVKLLAATVK RAVKSYGALE LKRMIRNCMS QDLSWKGPAC RWEETLLGLQ 600 VEGSSSGHEG EEVAPKAKSN VAAP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 5.0e-84 | 197 | 594 | 402 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 5.0e-101 | 97 | 594 | 517 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 4.0e-120 | 97 | 594 | 508 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 1.0e-152 | 97 | 599 | 517 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-161 | 98 | 594 | 510 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACB30384.1 | 0 | 75 | 624 | 57 | 610 | granule bound starch synthase Ia precursor [Lotus japonicus] |
GenBank | ACH72975.1 | 0 | 2 | 624 | 6 | 615 | granule-bound starch synthase [Nelumbo nucifera] |
GenBank | ACM78591.1 | 0 | 2 | 624 | 6 | 615 | granule-bound starch synthase [Nelumbo nucifera] |
RefSeq | XP_001757355.1 | 0 | 97 | 624 | 1 | 528 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001758536.1 | 0 | 59 | 624 | 1 | 565 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 97 | 624 | 10 | 536 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3vue_A | 0 | 97 | 624 | 10 | 536 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3guh_A | 0 | 97 | 602 | 1 | 479 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 2r4u_A | 0 | 97 | 602 | 1 | 479 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 2r4t_A | 0 | 97 | 602 | 1 | 479 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO629148 | 631 | 3 | 625 | 0 |
AJ568414 | 587 | 46 | 625 | 0 |
HO825853 | 519 | 105 | 623 | 0 |
HO590491 | 411 | 217 | 625 | 0 |
FC368651 | 278 | 146 | 423 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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