Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s28_242V6.1 |
Family | PL1 |
Protein Properties | Length: 515 Molecular Weight: 55608.5 Isoelectric Point: 5.3236 |
Chromosome | Chromosome/Scaffold: 28 Start: 1417707 End: 1419392 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 232 | 431 | 0 |
ITFAYSMTIHLKNELLITSYKTIDGRGVTVRIAGGAGLTMQRVSNIIVHGIAIHDIKPTGPARIMSSTSHVGSRGRTDGDAISIFSSKNIWIDHCYLARA ADGLIDVIRGSSGVSITNNYFTQHDKVMLLGANKEHWEDRNMYVTVAYNTFGPGLIQRMPRVRFGNVHVVNNDYTSGWGIYAIAGSEGPTILSQGNIFNA |
Full Sequence |
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Protein Sequence Length: 515 Download |
MARLTVSLVV LILVCAPLGR VLSQEEFQVL PDTSFAATEP NQSNAFDDEP AFAAEDSTFG 60 GDDEIAAAPE PESQASDSTS YDTSDLESDA QLNVSREETN SGESTDDTLV SDNDFGDGVG 120 NTTSADSDGF DMIENDDNSS SQDSREDFGA ASFSSRGACS TGNPVDDCWR CDPNWASYRQ 180 RLASCAIGFG RSAIGGKNGR IYVVTSSRDD NPANPARGTL RYAVTRPGPL WITFAYSMTI 240 HLKNELLITS YKTIDGRGVT VRIAGGAGLT MQRVSNIIVH GIAIHDIKPT GPARIMSSTS 300 HVGSRGRTDG DAISIFSSKN IWIDHCYLAR AADGLIDVIR GSSGVSITNN YFTQHDKVML 360 LGANKEHWED RNMYVTVAYN TFGPGLIQRM PRVRFGNVHV VNNDYTSGWG IYAIAGSEGP 420 TILSQGNIFN AYKGSKQVTK RINDGGNNFG GPKNWNWRSE GDRFISGAYF TSVPMKWSYQ 480 SYSKTASCSA RPATMVTRMV RGAGPLSCRR GTRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-29 | 195 | 504 | 323 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-55 | 243 | 429 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-64 | 238 | 429 | 203 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001757625.1 | 0 | 158 | 514 | 1 | 357 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767336.1 | 0 | 164 | 514 | 1 | 351 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767377.1 | 0 | 157 | 514 | 8 | 365 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783970.1 | 0 | 135 | 514 | 2 | 380 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001784519.1 | 0 | 155 | 514 | 13 | 372 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 163 | 507 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 163 | 507 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-21 | 194 | 432 | 22 | 249 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000002 | 246 | 429 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000007 | 253 | 405 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |