| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s2_790V6.1 |
| Family | PL1 |
| Protein Properties | Length: 484 Molecular Weight: 53107.1 Isoelectric Point: 5.418 |
| Chromosome | Chromosome/Scaffold: 2 Start: 4809381 End: 4811686 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| PL1 | 206 | 404 | 0 |
| IFNGSMTIRLAGELVMTSDKTIDGRGAEIHLVGSSQITIEEISNVIIHGIHIHDIISSGPHHILTAPSQHSLRAKTTGDAIQIKQSRHVWVDHCFLSKAA DGLVDGTKNSTFITVSNCYFEKHNKVMLFGAAPEDDFDRNMQVIVAFNRFGPGLTQRMPRCRYGNCHVANNFYTDGWGLYAIGGSEDPTILSQANRFIA | |||
| Full Sequence |
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| Protein Sequence Length: 484 Download |
| MQGSHVHCER VTALTGSTAS HSPRAFAGDV SRNYSLSEDF RRISILRTIF RSIADFLEFP 60 GINVGDKNIE QDRSRNLDNP SEDDIEVPEK FIDTSVAEYI SSADNEEDQA EGSGDDAVGT 120 PHLLMPGDTP YTCKSGNYID DCWWCDPNWQ VRRQALANCV IGFGQNATGG KNGKLYVVTS 180 NKDDIKKPEA GTLRFGVTRS EPLWIIFNGS MTIRLAGELV MTSDKTIDGR GAEIHLVGSS 240 QITIEEISNV IIHGIHIHDI ISSGPHHILT APSQHSLRAK TTGDAIQIKQ SRHVWVDHCF 300 LSKAADGLVD GTKNSTFITV SNCYFEKHNK VMLFGAAPED DFDRNMQVIV AFNRFGPGLT 360 QRMPRCRYGN CHVANNFYTD GWGLYAIGGS EDPTILSQAN RFIAPDATDR KEVTKRLDDD 420 GSTFGGWQKW DWMSIGDSFA SGAFFVGSGV QNASSAVDDR ARSFVPRHAS WAPSMTEDAG 480 PLS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-25 | 168 | 402 | 250 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-45 | 206 | 402 | 205 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-52 | 211 | 406 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001751580.1 | 0 | 133 | 482 | 4 | 350 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001751866.1 | 0 | 125 | 483 | 1 | 359 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001763554.1 | 0 | 133 | 482 | 21 | 366 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001771554.1 | 0 | 133 | 482 | 4 | 350 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001784519.1 | 0 | 131 | 483 | 15 | 365 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 137 | 483 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 137 | 483 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-18 | 205 | 408 | 50 | 252 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.0000000000003 | 221 | 428 | 146 | 377 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 1pcl_A | 0.0000000000004 | 218 | 402 | 75 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FG606120 | 326 | 132 | 456 | 0 |
| FC426281 | 257 | 131 | 386 | 0 |
| CK243724 | 287 | 133 | 418 | 0 |
| HO778688 | 398 | 93 | 482 | 0 |
| CO097456 | 286 | 132 | 416 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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