y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s302_43V6.1 |
Family | GT5 |
Protein Properties | Length: 601 Molecular Weight: 68189.4 Isoelectric Point: 8.3905 |
Chromosome | Chromosome/Scaffold: 302 Start: 311935 End: 316959 |
Description | starch synthase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 101 | 587 | 0 |
HVVHLATEIAPVAKVGGLADVVTGLGKALQEKHHRVEIIIPKYKTLDTSLIKNFKKLEKHFFSYFDGAEHENVVWTGFVEGLRVYFIDPLHPAGFFNRGR IYCEPDDFKRFTYFSRASLEFLLQFGKRPHLIHCHDWPVAVVAPMYKFIYANAGLRAKIALTCHNFEPQGKESMEALMSCGIQFKAPLHKDHFQDNILAD KINVLKSGLLHSDFITTVSPTHAREVLTPEGGEGLHTTLRSLTKKFYGIVNGIDDKVWDPATDSHLEHHFTADDLKGKELLKNKLRLRLGMAIQGIDARR PLVCCVSRLVPQKGVFLLRSAIFHTLNRGGQFILQGTSQIPEIKKEFDELAQQFEDHPHVRLILRCDETLTHNIFAAADIFVIPSMFEPCGLTQMYSMRY GTIPVVRKTGGLADSVFDVDQKYVAEEKRNGFTFNEPTEEALASTLDRAFWYFKEQPQWWKSLIQKVMRIDLSWDAAPIDQYLKLYE |
Full Sequence |
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Protein Sequence Length: 601 Download |
MSLDSNRLRH TRSEEVPVKV ASANRLDAVL PQRQQRTVAS DQLVLGNNVL LPSRYRDGVS 60 ASLRRIPPAP PSVRERQVEN IVASFLGSLE RPLPEKRPLY HVVHLATEIA PVAKVGGLAD 120 VVTGLGKALQ EKHHRVEIII PKYKTLDTSL IKNFKKLEKH FFSYFDGAEH ENVVWTGFVE 180 GLRVYFIDPL HPAGFFNRGR IYCEPDDFKR FTYFSRASLE FLLQFGKRPH LIHCHDWPVA 240 VVAPMYKFIY ANAGLRAKIA LTCHNFEPQG KESMEALMSC GIQFKAPLHK DHFQDNILAD 300 KINVLKSGLL HSDFITTVSP THAREVLTPE GGEGLHTTLR SLTKKFYGIV NGIDDKVWDP 360 ATDSHLEHHF TADDLKGKEL LKNKLRLRLG MAIQGIDARR PLVCCVSRLV PQKGVFLLRS 420 AIFHTLNRGG QFILQGTSQI PEIKKEFDEL AQQFEDHPHV RLILRCDETL THNIFAAADI 480 FVIPSMFEPC GLTQMYSMRY GTIPVVRKTG GLADSVFDVD QKYVAEEKRN GFTFNEPTEE 540 ALASTLDRAF WYFKEQPQWW KSLIQKVMRI DLSWDAAPID QYLKLYEHTV EDGHPPASIS 600 * 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0297 | GlgA | 5.0e-130 | 102 | 587 | 491 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
TIGR02095 | glgA | 2.0e-168 | 101 | 587 | 491 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PRK00654 | glgA | 6.0e-170 | 101 | 590 | 490 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-173 | 101 | 587 | 493 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PLN02939 | PLN02939 | 0 | 56 | 590 | 536 | + transferase, transferring glycosyl groups |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001759580.1 | 0 | 79 | 586 | 135 | 639 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001768603.1 | 0 | 1 | 540 | 1 | 534 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001768667.1 | 0 | 1 | 600 | 1 | 603 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781398.1 | 0 | 112 | 600 | 1 | 489 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781421.1 | 0 | 42 | 600 | 277 | 877 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 101 | 586 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 101 | 586 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 101 | 586 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 101 | 586 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 101 | 586 | 2 | 473 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BY978710 | 223 | 268 | 490 | 0 |
GO851132 | 335 | 175 | 508 | 0 |
HO414580 | 294 | 293 | 586 | 0 |
HO794758 | 502 | 96 | 586 | 0 |
CF828776 | 287 | 226 | 511 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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