Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s302_51V6.1 |
Family | GT5 |
Protein Properties | Length: 620 Molecular Weight: 69054.2 Isoelectric Point: 8.004 |
Chromosome | Chromosome/Scaffold: 302 Start: 360405 End: 364563 |
Description | starch synthase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 103 | 496 | 0 |
HIVHLASEMAPVAKVGGLGDVVTGLGRALQKKHHRVEIIIPKYKTLDMSGIKNFKKLNKHFYSYFEGAEHENMVWTGVVEGLRVFFIDPLHPAEFFNRGG IYCEPDDFKRFTYFSRASLEFLLQFGKRPHLIHCHDWPVAVVAPLCKSIYSSAGLTSKLAFTCHNFEPQGKESMEALTSCGLQFQAPLHTDHFQDNISAD RINVLKGGLVHSDFVTTVSPTYAKEVLTPEGGEGLHTTLRAMTKKFYGVVNGIDDTVWNPATDPHLEEHFSMDDLKGKEVLKNKLRLRLGLANLGIDAKR PLVCCVSRLVPQKGVHLLRSAIFHTLNRGGQFILQGTSQDPVIKKDFDELAQQFENHPHVRLVLRYEETLTHNIYGAADIFVIPSIFEPCGLTQ |
Full Sequence |
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Protein Sequence Length: 620 Download |
MSIETKRFRN SGAEESPVQV ASAKQLEMAL PQRSQETLAS GHQLLMGNNE LLSSFGNGVN 60 VPSRRITPAS CGAAIPQTQV KNLVAALVGS LECPPTVKRP RYHIVHLASE MAPVAKVGGL 120 GDVVTGLGRA LQKKHHRVEI IIPKYKTLDM SGIKNFKKLN KHFYSYFEGA EHENMVWTGV 180 VEGLRVFFID PLHPAEFFNR GGIYCEPDDF KRFTYFSRAS LEFLLQFGKR PHLIHCHDWP 240 VAVVAPLCKS IYSSAGLTSK LAFTCHNFEP QGKESMEALT SCGLQFQAPL HTDHFQDNIS 300 ADRINVLKGG LVHSDFVTTV SPTYAKEVLT PEGGEGLHTT LRAMTKKFYG VVNGIDDTVW 360 NPATDPHLEE HFSMDDLKGK EVLKNKLRLR LGLANLGIDA KRPLVCCVSR LVPQKGVHLL 420 RSAIFHTLNR GGQFILQGTS QDPVIKKDFD ELAQQFENHP HVRLVLRYEE TLTHNIYGAA 480 DIFVIPSIFE PCGLTQKGVP SLRYLSNEIA GTQMYSMRYG TIPVVRKTGG LADSVFDVDQ 540 KHAVVEKRNG FTFSEPTEEA LASALDRALL YYKEHPDWWK ALVSKVMRID MSWDAAPIDQ 600 YIKLYEHTVQ EGHPPASIS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0297 | GlgA | 1.0e-129 | 104 | 606 | 512 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 1.0e-169 | 103 | 609 | 507 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 1.0e-170 | 103 | 606 | 507 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 5.0e-173 | 103 | 606 | 510 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PLN02939 | PLN02939 | 0 | 91 | 609 | 520 | + transferase, transferring glycosyl groups |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001759580.1 | 0 | 98 | 605 | 149 | 639 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001768603.1 | 0 | 1 | 559 | 1 | 534 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001768667.1 | 0 | 1 | 619 | 1 | 603 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781398.1 | 0 | 114 | 619 | 1 | 489 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781421.1 | 0 | 43 | 619 | 277 | 877 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 103 | 605 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 103 | 605 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 103 | 605 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 103 | 605 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 103 | 605 | 2 | 473 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BY978710 | 223 | 270 | 492 | 0 |
GO851132 | 352 | 177 | 527 | 0 |
HO414580 | 311 | 295 | 605 | 0 |
CF828776 | 304 | 228 | 530 | 0 |
GW865616 | 290 | 208 | 496 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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